Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00648 and RBAM_003820
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:23
# Commandline: needle
# -asequence dna-align/BSNT_00648.1.9828.seq
# -bsequence dna-align/RBAM_003820___yclD1.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00648-RBAM_003820___yclD1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00648-RBAM_003820___yclD1.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00648
# 2: RBAM_003820___yclD1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 237
# Identity: 145/237 (61.2%)
# Similarity: 145/237 (61.2%)
# Gaps: 60/237 (25.3%)
# Score: 550.0
#
#
#=======================================
BSNT_00648 1 ------------------------------------------ATGAGCAA 8
.|.|||.|
RBAM_003820__ 1 ATGAAAACATGCCCGCGCTGTGAATCGAAAAAAGGAGAAACTGTCAGCCA 50
BSNT_00648 9 ATCGCCTGTAGAAGGCGCATGGGAAGTTTATCAGTGCCAAACATGCTTTT 58
||||||.||..|||||||.||||||.||||.||.||||||||.|||||||
RBAM_003820__ 51 ATCGCCGGTCAAAGGCGCTTGGGAAATTTACCAATGCCAAACCTGCTTTT 100
BSNT_00648 59 TTACATGGAGATCCTGTGAACCGGAAAGCATTACAAATCC-----CAAAA 103
|.|||||||||||||||||||||||||||||.||.||||| |
RBAM_003820__ 101 TCACATGGAGATCCTGTGAACCGGAAAGCATCACGAATCCGGCGGC---- 146
BSNT_00648 104 AATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGC---- 149
||.|||.||.||.||||||||.|||||.||.|||||.||.||.||
RBAM_003820__ 147 -ATTCAACCCGGCATTTAAAATCGATCCGAAAGAAACGGAGACGGCCGCA 195
BSNT_00648 150 AATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGA 186
.|| |||||.||.||.||||||.||||.||.|.|
RBAM_003820__ 196 CAT----GTTCCCGCTGTCCCGGAAAGAAAAGCGTAA 228
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