Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00594 and RBAM_003550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence pep-align/BSNT_00594.1.9828.seq
# -bsequence pep-align/RBAM_003550___yciC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00594-RBAM_003550___yciC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00594-RBAM_003550___yciC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00594
# 2: RBAM_003550___yciC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity: 195/405 (48.1%)
# Similarity: 205/405 (50.6%)
# Gaps: 183/405 (45.2%)
# Score: 980.0
#
#
#=======================================
BSNT_00594 1 MKKIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMSEVNIDAGLV 50
|||||||||||||||||||:||.|||||.|||||||||||||||||||||
RBAM_003550__ 1 MKKIPVTVLSGYLGAGKTTVLNHILQNRNGLKIAVIVNDMSEVNIDAGLV 50
BSNT_00594 51 KQEGGLSRTDEKLVEMSNGCICCTLREDLLIEVEKLAKDGRFDYIVIEST 100
||.||||||||||||:||||||||||||||:|||||||||||||||||||
RBAM_003550__ 51 KQGGGLSRTDEKLVELSNGCICCTLREDLLVEVEKLAKDGRFDYIVIEST 100
BSNT_00594 101 GISEPIPVAQTFSYIDEEMGIDLTKFCQLDTMVTVVDANRFWHDYQSGES 150
||||||||||||||||||||||||.||:||||||||||||||||:|||:|
RBAM_003550__ 101 GISEPIPVAQTFSYIDEEMGIDLTTFCRLDTMVTVVDANRFWHDFQSGDS 150
BSNT_00594 151 LLDRKEALGEEDEREIADLLIDQIEFCDVLILNKCDLVSEQELEQLENVL 200
|||||||.||||||.|||||||||||||||||||||:|.|:||||||.||
RBAM_003550__ 151 LLDRKEAAGEEDERVIADLLIDQIEFCDVLILNKCDMVGEKELEQLETVL 200
BSNT_00594 201 RKLQPRAKFIRCQRKCKTAGDFAYRVI----------------------- 227
|.|||||:.||..| |:.....|
RBAM_003550__ 201 RALQPRARLIRSVR-----GEVPAEYILNTGLFEFEEASSSAGWIKELTA 245
BSNT_00594 227 -------------------------------------------------- 227
RBAM_003550__ 246 GHEAHTPETEEYGITSFVYSRRLPFHTVRFDSWLHQSMPDNIVRAKGIAW 295
BSNT_00594 227 -------------------------------------------------- 227
RBAM_003550__ 296 CATRNSLALLMSQAGPAVSIEPVSYWVAAMPKLEQEQIKQQEPEILEDWD 345
BSNT_00594 227 -------------------------------------------------- 227
RBAM_003550__ 346 DQFGDRHTNLVFIGTDLDEAAITKELDQCLLTPSEFDSDWSQLEDPFQWD 395
BSNT_00594 227 ----- 227
RBAM_003550__ 396 IQRAE 400
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