Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00594 and RBAM_003550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_00594.1.9828.seq
# -bsequence dna-align/RBAM_003550___yciC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00594-RBAM_003550___yciC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00594-RBAM_003550___yciC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00594
# 2: RBAM_003550___yciC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1207
# Identity: 530/1207 (43.9%)
# Similarity: 530/1207 (43.9%)
# Gaps: 527/1207 (43.7%)
# Score: 1978.5
#
#
#=======================================
BSNT_00594 1 ATGAAAAAGATTCCGGTTACCGTACTGAGCGGATATCTAGGTGCGGGAAA 50
||||||||.|||||||||||.|||.|||||||.|||||.|||||.|||||
RBAM_003550__ 1 ATGAAAAAAATTCCGGTTACAGTATTGAGCGGCTATCTTGGTGCCGGAAA 50
BSNT_00594 51 AACAACATTGCTGAA-CAGCATTCTGCAAAATCGCGAAGGCTTGAAAATA 99
.||.||..|..|||| || .|||.|.|||||.|||.|.||.||.|||||.
RBAM_003550__ 51 GACGACCGTTTTGAATCA-TATTTTACAAAACCGCAACGGTTTAAAAATT 99
BSNT_00594 100 GCGGTTATCGTAAACGATATGAGCGAGGTGAACATTGACGCGGGCTTGGT 149
||.||.|||||.||.||.||||||||.||.||.||.||||||||||||||
RBAM_003550__ 100 GCCGTCATCGTCAATGACATGAGCGAAGTAAATATAGACGCGGGCTTGGT 149
BSNT_00594 150 TAAGCAGGAAGGGGGCCTTTCCAGAACAGATGAAAAGCTTGTGGAAATGT 199
.|||||||.|||.|||.|.||.||.||.|||||.||.||.||.|||.|.|
RBAM_003550__ 150 GAAGCAGGGAGGCGGCTTGTCAAGGACGGATGAGAAACTCGTAGAATTAT 199
BSNT_00594 200 CAAACGGCTGCATTTGCTGCACGCTTCGCGAAGACTTATTAATTGAAGTT 249
|.||||||||.||.|||||||||||.||.|||||.||||||.|.||||||
RBAM_003550__ 200 CCAACGGCTGTATCTGCTGCACGCTGCGTGAAGATTTATTAGTCGAAGTT 249
BSNT_00594 250 GAGAAGCTGGCAAAAGACGGACGGTTTGATTATATCGTCATCGAATCGAC 299
|||||.||.||.||||||||..|.|||||||||||.||.||.|||||.||
RBAM_003550__ 250 GAGAAACTCGCGAAAGACGGCAGATTTGATTATATAGTGATTGAATCAAC 299
BSNT_00594 300 AGGAATCAGCGAACCGATCCCGGTGGCCCAGACTTTCTCTTATATCGATG 349
.||.||||||||||||||.||.||.||||||||.||.||||||||.||||
RBAM_003550__ 300 CGGGATCAGCGAACCGATTCCCGTTGCCCAGACATTTTCTTATATAGATG 349
BSNT_00594 350 AAGAGATGGGAATCGATCTTACAAAATTCTGTCA-GCTGGATACGATGGT 398
||||.|||||.||.|||||.||||..||||| || ||||||.||.|||||
RBAM_003550__ 350 AAGAAATGGGCATTGATCTGACAACTTTCTG-CAGGCTGGACACAATGGT 398
BSNT_00594 399 GACAGTGGTTGATGCCAACCGTTTTTGGCATGATTATCAGTCAGGCGAAA 448
|||.|||||.|||||.|||||.||.||||||||||..|||||.||.||.|
RBAM_003550__ 399 GACCGTGGTGGATGCAAACCGCTTCTGGCATGATTTCCAGTCCGGTGACA 448
BSNT_00594 449 GCCTTCTGGACCGCAAAGAAGCATTGGGGGAAGAGGATGAAAGAGAAATC 498
|||||||.|||||.||.|||||...|||.||||||||||||.|.|..||.
RBAM_003550__ 449 GCCTTCTTGACCGGAAGGAAGCGGCGGGAGAAGAGGATGAACGGGTGATT 498
BSNT_00594 499 GCCGACCTCTTGATCGATCAAATTGAGTTTTGCGATGTACTGATCTTAAA 548
|||||..|.||.||.||.|||||.||||||||.|||||.||.||.|||||
RBAM_003550__ 499 GCCGATTTATTAATTGACCAAATCGAGTTTTGTGATGTGCTCATTTTAAA 548
BSNT_00594 549 TAAATGTGATTTGGTCAGCGAGCAAGAGCTCGAACAGCTTGAAAACGTTC 598
||||||.||..|||||.||||..|||||||.||||||||.||||..||||
RBAM_003550__ 549 TAAATGCGACATGGTCGGCGAAAAAGAGCTTGAACAGCTGGAAACGGTTC 598
BSNT_00594 599 TTCGTAAACTGCAGCCAAGAGCCAAGTTCATTCG--CTGTCAAAGGAAAT 646
||||...|.|.|||||..|.||||...|.||.|| |.|||...|||.|.
RBAM_003550__ 599 TTCGCGCATTACAGCCCCGTGCCAGACTGATCCGGTCCGTCCGCGGAGAA 648
BSNT_00594 647 GTAAAACCGC--AGGAGATTTTGCATACAGGGTTATTTAA---------- 684
|| ..|||| |..|.||.|||.||||.||.||||||.|
RBAM_003550__ 649 GT--GCCCGCCGAATACATATTGAATACCGGTTTATTTGAGTTTGAGGAA 696
BSNT_00594 684 -------------------------------------------------- 684
RBAM_003550__ 697 GCGAGTTCATCAGCAGGATGGATAAAGGAGCTGACGGCAGGTCATGAAGC 746
BSNT_00594 684 -------------------------------------------------- 684
RBAM_003550__ 747 GCACACTCCGGAAACGGAAGAGTACGGCATCACTTCGTTTGTGTACTCGC 796
BSNT_00594 684 -------------------------------------------------- 684
RBAM_003550__ 797 GGCGTTTGCCGTTTCATACCGTTCGTTTTGACAGCTGGCTGCATCAATCA 846
BSNT_00594 684 -------------------------------------------------- 684
RBAM_003550__ 847 ATGCCTGACAACATTGTGCGCGCAAAAGGAATTGCTTGGTGCGCAACCCG 896
BSNT_00594 684 -------------------------------------------------- 684
RBAM_003550__ 897 CAACAGCCTTGCGCTGCTGATGTCTCAGGCGGGTCCGGCGGTTTCGATTG 946
BSNT_00594 684 -------------------------------------------------- 684
RBAM_003550__ 947 AGCCTGTTTCTTATTGGGTGGCGGCAATGCCGAAACTTGAGCAGGAGCAG 996
BSNT_00594 684 -------------------------------------------------- 684
RBAM_003550__ 997 ATTAAACAGCAGGAACCGGAGATTCTGGAAGATTGGGACGACCAATTCGG 1046
BSNT_00594 684 -------------------------------------------------- 684
RBAM_003550__ 1047 AGACCGTCATACGAACCTGGTGTTTATCGGAACAGATTTAGATGAAGCAG 1096
BSNT_00594 684 -------------------------------------------------- 684
RBAM_003550__ 1097 CCATTACAAAGGAATTGGATCAGTGCCTGCTCACGCCGTCTGAGTTCGAT 1146
BSNT_00594 684 -------------------------------------------------- 684
RBAM_003550__ 1147 TCCGATTGGTCGCAGCTTGAAGATCCTTTTCAATGGGATATTCAGCGGGC 1196
BSNT_00594 684 ------- 684
RBAM_003550__ 1197 CGAATAA 1203
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