Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00440 and RBAM_003400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence pep-align/BSNT_00440___ycbE.1.9828.seq
# -bsequence pep-align/RBAM_003400___ycbE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00440___ycbE-RBAM_003400___ycbE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00440___ycbE-RBAM_003400___ycbE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00440___ycbE
# 2: RBAM_003400___ycbE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 460
# Identity: 191/460 (41.5%)
# Similarity: 286/460 (62.2%)
# Gaps: 29/460 ( 6.3%)
# Score: 1027.5
#
#
#=======================================
BSNT_00440___ 1 MKKD-----FANVTPAGKKTSVRWFIVFMLFLVTSINYADRATLSITGDS 45
|||: |:.| ..|.|..|:.|:.:||.:|:|||.|||::||.|.|
RBAM_003400__ 1 MKKETELRAFSPV--RNKPTRARYVILVLLFFITAINYIDRASVSIVGPS 48
BSNT_00440___ 46 VQHDLGLDSVAMGYVFSAFGWAYVIGQLPGGWLLDRFGSKTIIALSIFFW 95
:||.|.|....:|.|||||.|.|...|:|||.:||:||||....:|:|.|
RBAM_003400__ 49 IQHSLNLSPALLGIVFSAFSWTYTGMQIPGGLILDKFGSKRTYGISLFVW 98
BSNT_00440___ 96 SFFTLLQGAIGFFSAGTAIILLFALRFLVGLSEAPSFPGNGRVVASWFPS 145
|.|| |..:..|:...||..|.|:|::|:|:||.|.|:|.:|||.
RBAM_003400__ 99 SVFT------GVQAFATSFGFLFGCRLLIGIAESPAFPANNRIVTTWFPR 142
BSNT_00440___ 146 SERGTASAFFNSAQYFAIVIFSPLMGWLTHSFGWHSVFVVMGIAGILLAV 195
.||..|:..:.:.:|..:...:|::.|:..:|.|.:||:..|:.||:.:|
RBAM_003400__ 143 RERAFATGVYTAGEYVGLAFATPVLFWVLTAFDWRAVFISSGVLGIVFSV 192
BSNT_00440___ 196 IWLKTVYEPKKHPKVNEAELAYIEQGGGLISMDDSKSKQETESKWPYIKQ 245
.|.|..:||..:.|||..||.||::||||..:.|:..: ..|....|
RBAM_003400__ 193 FWFKMYHEPNGYRKVNREELDYIKEGGGLTEVSDAAGR----ISWADFVQ 238
BSNT_00440___ 246 LLTNRMLIGVYIAQYCITTLTYFFLTWFPVYLVQARGMSILEAGFVASLP 295
||..|.|:|:||.|:.:.:..:|||||||.||.:|:.|:.|:.||.||:|
RBAM_003400__ 239 LLKYRKLVGLYIGQFAVASTLFFFLTWFPTYLAEAKHMAFLKVGFAASIP 288
BSNT_00440___ 296 ALCGFAGGVLGGIVSDILLKKGRSLTFARKVPIIAGMLLSCSMIVCNYTD 345
.:..|.|.:.||..||.::|:|.|:..|||.|:|.|:||:.|:::.|.||
RBAM_003400__ 289 YIAAFFGVLFGGFWSDGMMKRGVSVNVARKTPVILGLLLTGSIVLANVTD 338
BSNT_00440___ 346 SAWLVVIIMSLAFFGKGFGALGWAVVSDTSPKECAGLSGGLFNTFGNIAS 395
||..|:.|:|:|.|.:|...:.|.::|:.:|.|..||:||:|:.|.|:|.
RBAM_003400__ 339 SAPAVLTILSIASFAQGMSNISWTMLSEVAPSETIGLAGGVFSFFANMAG 388
BSNT_00440___ 396 ITTPIIIGYIVNATGSFNGALVFVGANAIAAILSYLLLVGPIKRVVLKKQ 445
|.||:|||:||:||||:|||::||||.|.....||:.:||.::|:.|:
RBAM_003400__ 389 IITPLIIGFIVSATGSYNGAILFVGAVAFIGAFSYIFIVGKVERIKLR-- 436
BSNT_00440___ 446 EQDPDQSLPV 455
RBAM_003400__ 436 ---------- 436
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