Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00440 and RBAM_003400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_00440___ycbE.1.9828.seq
# -bsequence dna-align/RBAM_003400___ycbE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00440___ycbE-RBAM_003400___ycbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00440___ycbE-RBAM_003400___ycbE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00440___ycbE
# 2: RBAM_003400___ycbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity: 823/1557 (52.9%)
# Similarity: 823/1557 (52.9%)
# Gaps: 435/1557 (27.9%)
# Score: 1778.5
#
#
#=======================================
BSNT_00440___ 1 ATGAAAAAAGA---------------CTTTGCGAATGTTACA---CCGGC 32
.|||||||||| ||| || |||.|
RBAM_003400__ 1 TTGAAAAAAGAAACGGAGCTGAGGGCCTT-----------CAGTCCCGTC 39
BSNT_00440___ 33 GGGCAAAAAAACG--TCCGTGCGCTGGT----TCATCGTGTTTATGCTGT 76
.||||.|||.|| || |||||.|| |.||..||.||.|..|||
RBAM_003400__ 40 -CGCAATAAACCGACTC---GCGCTCGTTATGTGATATTGGTTCTTTTGT 85
BSNT_00440___ 77 TTCTTGTGACCTCTATTAACTACGCGGATCGAGCGACGCTTTCCATCACC 126
||.||.|.||..|.|||||.||....||.|||||.|...|.||.||...|
RBAM_003400__ 86 TTTTTATCACTGCGATTAATTATATAGACCGAGCCAGTGTATCTATTGTC 135
BSNT_00440___ 127 GGAGATTCCGTCCAGCACGATTTGG--GA---TTGGACTCGGTCGCCATG 171
||....|||.|.||.|| ||.| || |..|.|.|| |||..|.
RBAM_003400__ 136 GGCCCATCCATTCAACA----TTCGCTGAACCTAAGCCCCG--CGCTTTT 179
BSNT_00440___ 172 GGATAT-GTCTTTTCTGCCTTTGGCTGGGCCTAT---GTCATCGGA--CA 215
||..|| ||.||||||||.||..|||||.||||| | ||| ||
RBAM_003400__ 180 GGGCATCGTTTTTTCTGCGTTCAGCTGGACCTATACGG-----GGATGCA 224
BSNT_00440___ 216 GCTTCCGGGCGGCTGGCTGC----TGGACCGTTTTGGTTCAAA---GACT 258
|.||||.|||| |||| | ||||....||.||.||||| |||
RBAM_003400__ 225 GATTCCAGGCG---GGCT-CATTTTGGATAAATTCGGGTCAAAACGGAC- 269
BSNT_00440___ 259 AT----CATTGCGTTAAGCATCTTTTTCTGGTCGTTTTTTAC-------- 296
|| .|||.|.||| |||.|.||||||.|||||||
RBAM_003400__ 270 ATACGGAATTTCTTTA------TTTGTGTGGTCGGTTTTTACCGGAGTAC 313
BSNT_00440___ 297 --GC---TGCTGCAAGGGGCGATT--GGCTTTTTCTCCGCCGGCACAGCG 339
|| |||..|||| || ||.|||.|.|.||.|.|| ||
RBAM_003400__ 314 AAGCTTTTGCGACAAG------TTTCGGGTTTCTATTCGGCTGC----CG 353
BSNT_00440___ 340 ATTATCCTGCTGTTTGCACTGCGTTTTCTGGTTGGTTTATCAGAAGCGCC 389
|||||| || |.||..||.|.|||.||||
RBAM_003400__ 354 -----CCTGCT-----CA-------------TCGGCATAGCTGAATCGCC 380
BSNT_00440___ 390 TTCATTTCCCGGAAACGGCAGAGTTGTTGCCTCATGGTTTCCAAGCTCCG 439
..|.|||||.|.||||..|.|..||||..|..|||||||||||||
RBAM_003400__ 381 GGCGTTTCCGGCAAACAACCGGATTGTCACGACATGGTTTCCAAG----- 425
BSNT_00440___ 440 AGCGCGGGACAGCTTCAGCCTTT----------TTTAATTCAGCACAATA 479
||||||..|| |||||| ||| |||
RBAM_003400__ 426 ---GCGGGAACGC----GCCTTTGCGACGGGTGTTT-----------ATA 457
BSNT_00440___ 480 CTTC---GCAAT-CGTCATTTTTTCTCCTTTAATGGGCTGGC-TTACCCA 524
|..| |.||| .||| |||||||| ||..|||
RBAM_003400__ 458 CGGCGGGGGAATATGTC-----------------GGGCTGGCGTTTGCCA 490
BSNT_00440___ 525 C-----------TCT--------------TTCGGCTGGCATTCCGTCTTC 549
| ||| ||.|.|||||...||||.||.
RBAM_003400__ 491 CACCGGTTTTATTCTGGGTGTTAACGGCATTTGACTGGCGCGCCGTATTT 540
BSNT_00440___ 550 GTT---------GTTATGGGTATTGCGGGCATTCTTCTGGCTGTCATCTG 590
.|| ||..|.||.|||| |.|||| |.||..||||
RBAM_003400__ 541 ATTTCCTCAGGAGTGCTCGGAATTG-------TTTTCT--CCGTTTTCTG 581
BSNT_00440___ 591 GCTAAAAACGGTGT---ACGAACCGAAAAAAC----ACCCAAAGGTTAAT 633
|.|.|||| ||| ||||.||| ||| |.|..||.||.|||
RBAM_003400__ 582 GTTTAAAA---TGTATCACGAGCCG----AACGGGTATCGGAAAGTGAAT 624
BSNT_00440___ 634 GAAGCTGAGCTTGCGTACATCGAACAGGGCGGCGGACTGATTTCCATGGA 683
...|..|||||||..||.||..||.|.|||||||||||||.| ||
RBAM_003400__ 625 CGTGAGGAGCTTGATTATATTAAAGAAGGCGGCGGACTGACT------GA 668
BSNT_00440___ 684 --TGACAGTAAAAGCAAACAAGAGACAG--AATCGAAATGGCCGTATATC 729
||.|.| |.|||..| |.||| .|||| |||.||.||.||
RBAM_003400__ 669 GGTGTCTG---ATGCAGCC----GGCAGGATATCG---TGGGCGGATTTC 708
BSNT_00440___ 730 AAACAGCTGTTAACGAACCGCATGCTGATTGGTGTGTACATCGCGCAAT- 778
...|||||..|||...||||||.|||..|.||..||||.||||..||||
RBAM_003400__ 709 GTCCAGCTTCTAAAATACCGCAAGCTTGTCGGATTGTATATCGGCCAATT 758
BSNT_00440___ 779 -ACTGTATTACGACTCTCAC-CTAT--TTCTTTCTCACATGGTTTCCGGT 824
.|.||| |.||| ||| ||.| ||||||.|.||||||||||||..
RBAM_003400__ 759 CGCCGTA----GCCTC-CACGCTGTTCTTCTTTTTGACATGGTTTCCGAC 803
BSNT_00440___ 825 ATATTTGGTTCAGGC-CCGCGGCATGTCTATTCTT-GAAGCTGGGTTTGT 872
.|||.|||...|||| ..|| .||||.|| ||||| .|||..||.||.|.
RBAM_003400__ 804 TTATCTGGCGGAGGCAAAGC-ACATGGCT-TTCTTAAAAGTCGGCTTCGC 851
BSNT_00440___ 873 CGCTTCCCTGCCG----GCGCTGTGCGGATTTGCCGGCGGCGTGCTTGGG 918
|||.||..|.||| .||| ||..|||..|||||...|| ||.||
RBAM_003400__ 852 CGCATCAATCCCGTATATCGC----CGCTTTTTTCGGCGTATTG-TTCGG 896
BSNT_00440___ 919 GGCATTGT-GTCAGACATCTTGCTCAAAAAAGGCCGT-TCACTGACCTTT 966
.|.|||.| |||.|||..|.||.| .|||..||..|| ||..|||.|.||
RBAM_003400__ 897 CGGATTTTGGTCTGACGGCATGAT-GAAACGGGGGGTGTCGGTGAACGTT 945
BSNT_00440___ 967 GCAAGAAAAGTGCCAATCATTGCCGGCATGCTGCTGTCTTGCAGTATGAT 1016
||..|.|||..|||..||||...|||..|.||||||
RBAM_003400__ 946 GCCCGGAAAACGCCCGTCATCCTCGGTCTTCTGCTG-------------- 981
BSNT_00440___ 1017 TGTCTGCAACTACACAGATTCAGCAT--GGCTCGTC----GTTATC--AT 1058
||||..|| ||| .||||| | |||| | ||
RBAM_003400__ 982 -------------ACAGGCTC--CATCGTGCTCG-CGAATGTTA-CGGAT 1014
BSNT_00440___ 1059 TATGTCGCTCGCGTTTTTCGGA----------AAAGGCTTC---GGCGCA 1095
|.|| |.|.||||.|||| || .|..||||| .|||||
RBAM_003400__ 1015 TCTG-CTCCCGCGGTTTT--GACGATCTTATCCATTGCTTCTTTTGCGCA 1061
BSNT_00440___ 1096 CTGGGCTGGGC-TGT----CGTGTC--GGAC-----------ACGTCTC- 1126
|||| ||| |.|.|| |||| |.|||.|
RBAM_003400__ 1062 -------GGGCATGTCCAACATATCCTGGACGATGCTGAGTGAGGTCGCG 1104
BSNT_00440___ 1127 -----CGAAAGAATGTGCAGGATT---AAGCGGCGGTTTGTTCAACACTT 1168
|||||.||| .||||| |.|.|||| |.||.|.|..||
RBAM_003400__ 1105 CCAAGCGAAACAAT----CGGATTGGCAGGGGGCG---TCTTTAGCTTTT 1147
BSNT_00440___ 1169 TCGGCAATATTGCCTCGATTACAACACCGATTATTATCGGATACATTGTT 1218
|||.||||||.|||...||||..||.|||.||||.|||||.|..||.|||
RBAM_003400__ 1148 TCGCCAATATGGCCGGTATTATCACCCCGCTTATCATCGGGTTTATCGTT 1197
BSNT_00440___ 1219 AATGCCACTGGATCTTTTAATGGCGCGCTTGTGTTTGTCGGCGCTAACGC 1268
..|||.||.||.||||.|||.||.|||.||.||||||||||||||..|||
RBAM_003400__ 1198 TCTGCGACCGGTTCTTATAACGGAGCGATTCTGTTTGTCGGCGCTGTCGC 1247
BSNT_00440___ 1269 GATT----GCGGCGA---TCCTAAGCTATTTGCTGCTGGTCGGGCCGATC 1311
||| |.||| | ||.|| ||||| |..|.|||||
RBAM_003400__ 1248 -ATTTATCGGGGC-ATTTTCTTA---TATTT--TCATTGTCGG------- 1283
BSNT_00440___ 1312 AAACGGGTCGTGTTAAAGAAACAAGAACAAGACCCCGATCAATCGTTGCC 1361
||| |||.| ||.|.|..||| |.|||||..
RBAM_003400__ 1284 AAA--GGTGG----AACGCATTAAG-------CTCCGATAG--------- 1311
BSNT_00440___ 1362 TGTCTAA 1368
RBAM_003400__ 1311 ------- 1311
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