Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_00547 and RBAM_003340

See DNA alignment / Visit BSNT_00547 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence pep-align/BSNT_00547.1.9828.seq
#    -bsequence pep-align/RBAM_003340___ycgH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00547-RBAM_003340___ycgH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00547-RBAM_003340___ycgH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00547
# 2: RBAM_003340___ycgH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 447
# Identity:     134/447 (30.0%)
# Similarity:   146/447 (32.7%)
# Gaps:         285/447 (63.8%)
# Score: 657.0
# 
#
#=======================================

BSNT_00547         0 --------------------------------------------------      0
                                                                       
RBAM_003340__      1 MGKSQDQPKGNLAWWQLSLIGVGCTIGTGFFLGSSIAIVKSGYSALISFL     50

BSNT_00547         0 --------------------------------------------------      0
                                                                       
RBAM_003340__     51 IAGLGTYFVFEQLAKLSAKQPEKGSFCAYARKAFGTWAGFSNGWVYWSSE    100

BSNT_00547         0 --------------------------------------------------      0
                                                                       
RBAM_003340__    101 MLITGSQLTAISLFTKHWFPNVPLWIFASIYAVLGLLIIFTGLSVFQKTE    150

BSNT_00547         0 --------------------------------------------------      0
                                                                       
RBAM_003340__    151 NVLAVVKTAAIFMFIVIAILALCGIFSHKPDVQVPNESKDLFPHGAMGLW    200

BSNT_00547         1 -----------------------------------MLATLAIIYIISIGL     15
                                                        |||.||:||:||:||
RBAM_003340__    201 TGLIYAFYAFGGIEVLGLMTVHLKKPEEASKSGRLMLAVLAVIYVISLGL    250

BSNT_00547        16 ALLLVPLHAFTEQDSPFITSLKGYNLEIILDIFNGIFIIAGFSTLVASLF     65
                     |||||||..||||||||||||||::|:|||||||||||||||||||||||
RBAM_003340__    251 ALLLVPLGKFTEQDSPFITSLKGFHLDIILDIFNGIFIIAGFSTLVASLF    300

BSNT_00547        66 AVTTLLCTMADDGDAPKCFTLKEGKKICWPAL-LTFAGLVLSIILSLVLP    114
                     |||||||||||||||||||.|||.|||||||| ||||||::|||||||||
RBAM_003340__    301 AVTTLLCTMADDGDAPKCFRLKENKKICWPALGLTFAGLIVSIILSLVLP    350

BSNT_00547       115 KNIYEHMTTAAGLMLLYTWLFIMFSSKKLTDPEGMGKTQIYCSDCCGCVR    164
                     ||||||||||||||||||||||:||.|||.:...||..||..:     :.
RBAM_003340__    351 KNIYEHMTTAAGLMLLYTWLFILFSGKKLLETTKMGTVQIVIA-----LV    395

BSNT_00547       165 YIV--------------------------------------------    167
                     .||                                            
RBAM_003340__    396 LIVAAVSGTLFEKSSRPGFLVSLCFLAVIAIVTWIVQKKQGHSPAGS    442


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.