Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00547 and RBAM_003340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence pep-align/BSNT_00547.1.9828.seq
# -bsequence pep-align/RBAM_003340___ycgH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00547-RBAM_003340___ycgH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00547-RBAM_003340___ycgH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00547
# 2: RBAM_003340___ycgH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 447
# Identity: 134/447 (30.0%)
# Similarity: 146/447 (32.7%)
# Gaps: 285/447 (63.8%)
# Score: 657.0
#
#
#=======================================
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 1 MGKSQDQPKGNLAWWQLSLIGVGCTIGTGFFLGSSIAIVKSGYSALISFL 50
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 51 IAGLGTYFVFEQLAKLSAKQPEKGSFCAYARKAFGTWAGFSNGWVYWSSE 100
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 101 MLITGSQLTAISLFTKHWFPNVPLWIFASIYAVLGLLIIFTGLSVFQKTE 150
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 151 NVLAVVKTAAIFMFIVIAILALCGIFSHKPDVQVPNESKDLFPHGAMGLW 200
BSNT_00547 1 -----------------------------------MLATLAIIYIISIGL 15
|||.||:||:||:||
RBAM_003340__ 201 TGLIYAFYAFGGIEVLGLMTVHLKKPEEASKSGRLMLAVLAVIYVISLGL 250
BSNT_00547 16 ALLLVPLHAFTEQDSPFITSLKGYNLEIILDIFNGIFIIAGFSTLVASLF 65
|||||||..||||||||||||||::|:|||||||||||||||||||||||
RBAM_003340__ 251 ALLLVPLGKFTEQDSPFITSLKGFHLDIILDIFNGIFIIAGFSTLVASLF 300
BSNT_00547 66 AVTTLLCTMADDGDAPKCFTLKEGKKICWPAL-LTFAGLVLSIILSLVLP 114
|||||||||||||||||||.|||.|||||||| ||||||::|||||||||
RBAM_003340__ 301 AVTTLLCTMADDGDAPKCFRLKENKKICWPALGLTFAGLIVSIILSLVLP 350
BSNT_00547 115 KNIYEHMTTAAGLMLLYTWLFIMFSSKKLTDPEGMGKTQIYCSDCCGCVR 164
||||||||||||||||||||||:||.|||.:...||..||..: :.
RBAM_003340__ 351 KNIYEHMTTAAGLMLLYTWLFILFSGKKLLETTKMGTVQIVIA-----LV 395
BSNT_00547 165 YIV-------------------------------------------- 167
.||
RBAM_003340__ 396 LIVAAVSGTLFEKSSRPGFLVSLCFLAVIAIVTWIVQKKQGHSPAGS 442
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