Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00547 and RBAM_003340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_00547.1.9828.seq
# -bsequence dna-align/RBAM_003340___ycgH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00547-RBAM_003340___ycgH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00547-RBAM_003340___ycgH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00547
# 2: RBAM_003340___ycgH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1342
# Identity: 389/1342 (29.0%)
# Similarity: 389/1342 (29.0%)
# Gaps: 851/1342 (63.4%)
# Score: 1404.5
#
#
#=======================================
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 1 ATGGGTAAATCACAGGACCAGCCTAAAGGAAATCTCGCTTGGTGGCAGCT 50
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 51 CTCCTTAATCGGCGTCGGCTGCACAATCGGGACGGGCTTTTTTCTCGGGT 100
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 101 CCAGCATCGCTATTGTCAAAAGCGGATATTCCGCGCTGATCTCATTTCTT 150
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 151 ATTGCCGGGCTTGGCACCTATTTTGTCTTTGAGCAGCTCGCGAAGCTTTC 200
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 201 GGCCAAACAGCCCGAAAAGGGGTCTTTTTGCGCTTATGCGAGAAAGGCTT 250
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 251 TCGGCACTTGGGCCGGTTTCAGCAACGGATGGGTGTACTGGTCGTCCGAG 300
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 301 ATGCTGATCACTGGAAGCCAGCTGACAGCGATCTCGCTGTTTACAAAGCA 350
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 351 TTGGTTTCCGAATGTGCCGCTGTGGATTTTCGCCTCCATCTATGCGGTGC 400
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 401 TCGGTCTTTTGATTATATTTACGGGGCTGTCCGTTTTTCAAAAAACGGAA 450
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 451 AATGTGCTCGCTGTTGTCAAGACAGCGGCGATTTTTATGTTTATCGTGAT 500
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 501 CGCCATATTGGCGCTGTGCGGTATATTTTCTCATAAACCGGATGTGCAGG 550
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 551 TGCCGAACGAATCAAAGGATTTGTTCCCGCACGGAGCGATGGGGTTATGG 600
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 601 ACGGGATTGATTTATGCGTTTTACGCCTTCGGAGGAATTGAAGTCTTGGG 650
BSNT_00547 0 -------------------------------------------------- 0
RBAM_003340__ 651 GCTGATGACCGTGCATTTGAAAAAGCCGGAGGAAGCCTCAAAGTCAGGCC 700
BSNT_00547 1 -----ATGCTGGCGACG--CTGGCGATTATTTATATCATTTCAATCGGGC 43
|||||.|| || ||.|||.|.|||||..|||||||..||||.|
RBAM_003340__ 701 GGCTGATGCTTGC--CGTTCTTGCGGTGATTTACGTCATTTCTCTCGGCC 748
BSNT_00547 44 TTGCTCTGCTTTTGGTTCCGTTACACGCG----TTTACTGAACAGGACAG 89
|.||.|||||.||.||.|||.| |.| ||.||.|||||||||||
RBAM_003340__ 749 TGGCGCTGCTGTTAGTGCCGCT----GGGCAAATTCACCGAACAGGACAG 794
BSNT_00547 90 TCCGTTCATTACATCATTAAAAGGATATAACCTTGAGATCATCCTTGATA 139
.|||||.||||||||..|.||.||.|.|.|..|.||.|||||.|||||||
RBAM_003340__ 795 CCCGTTTATTACATCGCTGAAGGGTTTTCATTTAGATATCATTCTTGATA 844
BSNT_00547 140 TATTTAACGGGATTTTCATCATCGCCGGGTTCTCGACCCTTGTCGCTTCG 189
|.||||||||||||||.||.||.||.||.||.||.||.||.|||||.|||
RBAM_003340__ 845 TTTTTAACGGGATTTTTATTATTGCGGGATTTTCCACGCTCGTCGCCTCG 894
BSNT_00547 190 CTTTTTGCCGTTACGACATTGCTTTGTACAATGGCTGATGACGGCGACGC 239
||.||||||||.|||||||||||||||||.|||||.||||||||.||.||
RBAM_003340__ 895 CTGTTTGCCGTGACGACATTGCTTTGTACGATGGCAGATGACGGAGATGC 944
BSNT_00547 240 GCCGAAATGCTTTACTCTAAAGGAAGGCAAAAAAATATGCTGGCCGGCAC 289
||||||||||||.|...||||||||..|||||||||.||||||||.||.|
RBAM_003340__ 945 GCCGAAATGCTTCAGATTAAAGGAAAACAAAAAAATCTGCTGGCCTGCGC 994
BSNT_00547 290 TTC----TGACGTTTGCGGGGCTTGTCCTCTCCATTATTCTGTCGTTAGT 335
|| ||||||||||.||.||..||.|||||||.||.|||||.||.||
RBAM_003340__ 995 -TCGGATTGACGTTTGCCGGACTCATCGTCTCCATCATCCTGTCATTGGT 1043
BSNT_00547 336 GCTGCCTAAAAACATTTATGAGCATATGACAACAGCTGCGGGGCTTATGC 385
||||||.|||||.||.|||||.||.||||||||.||.|||||.||.||||
RBAM_003340__ 1044 GCTGCCGAAAAATATATATGAACACATGACAACCGCGGCGGGCCTGATGC 1093
BSNT_00547 386 TTTTATACACTTGGCTGTTTATCATGTTCTCCAGCAAAAAGCTGACTGAT 435
||.|.||.||.||||||||.||..|||||||..||||.|| ||||.|
RBAM_003340__ 1094 TTCTTTATACGTGGCTGTTCATTTTGTTCTCGGGCAAGAA----ACTGCT 1139
BSNT_00547 436 CCCGAGGGC----ATGGGAAAAACG--CAAAT--TTA------TTGTTCT 471
|...|.|.| ||||| ||.|| ||.|| ||| ||||.||
RBAM_003340__ 1140 CGAAACGACAAAGATGGG--AACCGTACAGATTGTTATCGCCCTTGTGCT 1187
BSNT_00547 472 GATTGCTGCGGCTGTGTCCGGTACATTGTTTGA----------------- 504
|||||..|||||.||.|||||.||..|||||||
RBAM_003340__ 1188 GATTGTCGCGGCCGTCTCCGGGACGCTGTTTGAGAAATCGAGCCGGCCCG 1237
BSNT_00547 504 -------------------------------------------------- 504
RBAM_003340__ 1238 GTTTTCTGGTCAGCCTTTGTTTTCTCGCCGTCATTGCGATCGTGACATGG 1287
BSNT_00547 504 ------------------------------------------ 504
RBAM_003340__ 1288 ATCGTACAAAAAAAGCAGGGACACAGCCCTGCCGGATCATAG 1329
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