Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00541 and RBAM_003290

See DNA alignment / Visit BSNT_00541 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence pep-align/BSNT_00541___ldh.1.9828.seq
#    -bsequence pep-align/RBAM_003290___ldh.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00541___ldh-RBAM_003290___ldh.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00541___ldh-RBAM_003290___ldh.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00541___ldh
# 2: RBAM_003290___ldh
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 321
# Identity:     284/321 (88.5%)
# Similarity:   299/321 (93.1%)
# Gaps:           4/321 ( 1.2%)
# Score: 1483.0
# 
#
#=======================================

BSNT_00541___      1 MMNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMD     50
                     |||:.||||||||||||||||||||||||||||||:||||:|||||||||
RBAM_003290__      1 MMNERVNKVALIGAGFVGSSYAFALINQGITDELVIIDVNREKAMGDVMD     50

BSNT_00541___     51 LNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNL    100
                     |||||||||.||||||||||||||||||||||||||||||||||||||||
RBAM_003290__     51 LNHGKAFAPHPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNL    100

BSNT_00541___    101 KIFKGIVSEVMASGFDGIFLIATNPVDILTYATWKFSGLPKERVIGSGTT    150
                     .|||.||.||||||||||||:|||||||||||||.|||||||||||||||
RBAM_003290__    101 AIFKSIVGEVMASGFDGIFLVATNPVDILTYATWTFSGLPKERVIGSGTT    150

BSNT_00541___    151 LDSARFRFMLSEYFGAAPQNVHAHIIGEHGDTELPVWSHANVGGVPVSEL    200
                     |||||||:|||||||||||||||||||||||||||||||||:|||||.:|
RBAM_003290__    151 LDSARFRYMLSEYFGAAPQNVHAHIIGEHGDTELPVWSHANIGGVPVQQL    200

BSNT_00541___    201 VEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARITKAILH    250
                     :||:.||||:|||||||||||||||||||||||||||||||||||||||.
RBAM_003290__    201 LEKHAAYKQDELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARITKAILR    250

BSNT_00541___    251 NENSILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITELNLNEKEKEQF    300
                     |||||||||||||||||.:||:|||||||||.||||:|||.|||.|:.||
RBAM_003290__    251 NENSILTVSTYLDGQYGVNDVFIGVPAVVNRNGIAGVTELELNETEQAQF    300

BSNT_00541___    301 LHSAGVLKNILKPHFAEQKVN    321
                     ..||.|||:||.|||||    
RBAM_003290__    301 SRSANVLKDILAPHFAE----    317


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.