Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00541 and RBAM_003290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_00541___ldh.1.9828.seq
# -bsequence dna-align/RBAM_003290___ldh.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00541___ldh-RBAM_003290___ldh.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00541___ldh-RBAM_003290___ldh.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00541___ldh
# 2: RBAM_003290___ldh
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 977
# Identity: 772/977 (79.0%)
# Similarity: 772/977 (79.0%)
# Gaps: 34/977 ( 3.5%)
# Score: 3079.5
#
#
#=======================================
BSNT_00541___ 1 ATGATGAACAAACATGTAAATAAAGTAGCTTTAATCGGAGCGGGTTTTGT 50
|||||||||.|||..||.||.||||||||.|||||||||||.||||||||
RBAM_003290__ 1 ATGATGAACGAACGAGTGAACAAAGTAGCATTAATCGGAGCAGGTTTTGT 50
BSNT_00541___ 51 TGGAAGCAGTTATGCATTTGCGTTAATTAACCAAGGGATCACAGATGAGC 100
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_003290__ 51 TGGAAGCAGTTATGCATTTGCGTTAATTAACCAAGGGATCACAGATGAGC 100
BSNT_00541___ 101 TTGTGGTCATTGATGTAAATAAAGAAAAAGCAATGGGCGATGTGATGGAT 150
|||||.|||||||||||||||.|||||||||.|||||.|||||.||||||
RBAM_003290__ 101 TTGTGATCATTGATGTAAATAGAGAAAAAGCCATGGGAGATGTCATGGAT 150
BSNT_00541___ 151 TTAAACCACGGAAAGGCGTTTGCGCCACAACCGGTCAAAACATCTTACGG 200
|||||.|||||||||||.||||||||.||.|||||||||||.||||||||
RBAM_003290__ 151 TTAAATCACGGAAAGGCATTTGCGCCTCATCCGGTCAAAACGTCTTACGG 200
BSNT_00541___ 201 AACATATGAAGACTGCAAGGATGCTGATATTGTCTGCATTTGCGCCGGAG 250
.||||||||.||.|||||||||||.|||||.||.|||||.||.||.||.|
RBAM_003290__ 201 CACATATGAGGATTGCAAGGATGCCGATATCGTGTGCATCTGTGCAGGGG 250
BSNT_00541___ 251 CAAACCAAAAACCTGGTGAGACACGCCTTGAATTAGTAGAAAAGAA-CTT 299
|.||.||||||||.||.||.||..|.|||||..|.||.|||||.|| ||.
RBAM_003290__ 251 CCAATCAAAAACCGGGCGAAACGAGACTTGAGCTGGTCGAAAAAAATCTC 300
BSNT_00541___ 300 GAAGATTTTCAAAGGCATCGTCAGTGAGGTCATGGCGAGCGGATTTGACG 349
| ..|||||.|||.||||.|||.||||.||.|||||.|||||||||||||
RBAM_003290__ 301 G-CCATTTTTAAAAGCATTGTCGGTGAAGTAATGGCAAGCGGATTTGACG 349
BSNT_00541___ 350 GCATTTTCTTAATCGCGACAAATCCGGTTGATATCCTGACTTACGCAACA 399
||||.|||.|..|.||.|||||.|||||.||.||.||.||.||.||.||.
RBAM_003290__ 350 GCATCTTCCTCGTTGCCACAAACCCGGTCGACATTCTCACCTATGCGACT 399
BSNT_00541___ 400 TGGAAATTTAGCGGCCTGCCAAAAGAGCGGGTGATCGGAAGCGGCACAAC 449
||||.|||.|||||||||||.|||||.||.||.|||||.||||||||.||
RBAM_003290__ 400 TGGACATTCAGCGGCCTGCCGAAAGAACGCGTCATCGGCAGCGGCACGAC 449
BSNT_00541___ 450 ACTAGATTCTGCGAGATTCCGTTTCATGCTGAGCGAATACTTTGGCGCAG 499
|||.|||||||||.|||||||||..||||||||.||||||||.||.||.|
RBAM_003290__ 450 ACTGGATTCTGCGCGATTCCGTTATATGCTGAGTGAATACTTCGGAGCCG 499
BSNT_00541___ 500 CGCCTCAAAACGTACACGCGCATATTATCGGAGAGCACGGCGACACAGAG 549
|.||.||||||||||||||.||.||||||||.|||||||||||.||.|||
RBAM_003290__ 500 CTCCGCAAAACGTACACGCCCACATTATCGGCGAGCACGGCGATACCGAG 549
BSNT_00541___ 550 CTTCCTGTTTGGAGCCACGCGAATGTCGGCGGTGTGCCGGT-CAGTGAAC 598
||.|||||.|||||.|||||.|||.|||||||.|||||||| ||| .||.
RBAM_003290__ 550 CTCCCTGTATGGAGTCACGCCAATATCGGCGGAGTGCCGGTGCAG-CAAT 598
BSNT_00541___ 599 TCGTTGAGAAAAACGATGCGTACAAACAAGAGGAGCTGGACCAAATTGTA 648
|..|.||||||.|.|..||.||||||||.||.||||||||.||.||.||.
RBAM_003290__ 599 TGCTGGAGAAACATGCAGCTTACAAACAGGACGAGCTGGATCAGATCGTT 648
BSNT_00541___ 649 GATGATGTGAAAAACGCAGCTTACCATATCATTGAGAAAAAAGGCGCGAC 698
||.|||||||||||||||||.||.|||||.||.|||||||||||||||||
RBAM_003290__ 649 GACGATGTGAAAAACGCAGCCTATCATATTATCGAGAAAAAAGGCGCGAC 698
BSNT_00541___ 699 TTATTATGGGGTTGCGATGAGTCTTGCTCGCATTACAAAAGCCATTCTTC 748
.|||||.||.||.||||||||.||.||.|||||.||||||||.|||.|.|
RBAM_003290__ 699 ATATTACGGAGTGGCGATGAGCCTCGCCCGCATCACAAAAGCGATTTTGC 748
BSNT_00541___ 749 ATAATGAAAACAGCATATTAACTGTCAGCACATATTTGGACGGGCAATAC 798
.|||||||||||||||.|||||.||||||||||||.|||||||.||||||
RBAM_003290__ 749 GTAATGAAAACAGCATTTTAACCGTCAGCACATATCTGGACGGCCAATAC 798
BSNT_00541___ 799 GGTGCAGATGACGTGTACATCGGTGTGCCGGCTGTCGTGAACCGCGGA-- 846
||||.|.|.|||||.|..|||||.||.|||||.|||||.|| .||||
RBAM_003290__ 799 GGTGTAAACGACGTCTTTATCGGCGTTCCGGCCGTCGTCAA--TCGGAAC 846
BSNT_00541___ 847 GGGATCGCAGGTATCACTGAGC-TGAACTTAAATGAGAAAGAAAAAGAAC 895
||.||.||||||.|.||.||.| |||.|| |||.||||.|||||
RBAM_003290__ 847 GGCATTGCAGGTGTGACGGAACTTGAGCT-------GAATGAAACAGAAC 889
BSNT_00541___ 896 AG------TTCCTTCACAGCGCCGGCGTCCTTAAAAACATTTTAAAACCT 939
|| |||...|.||||||...|||.||.|||.|.|||.|....||.
RBAM_003290__ 890 AGGCTCAATTCAGCCGCAGCGCAAACGTGCTGAAAGATATTCTCGCTCCG 939
BSNT_00541___ 940 CATTTTGCAGAACAAAAAGTCAACTAA 966
|||||.|||||..||
RBAM_003290__ 940 CATTTCGCAGAGTAA------------ 954
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