Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00541 and RBAM_003290

See Amino acid alignment / Visit BSNT_00541 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence dna-align/BSNT_00541___ldh.1.9828.seq
#    -bsequence dna-align/RBAM_003290___ldh.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00541___ldh-RBAM_003290___ldh.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00541___ldh-RBAM_003290___ldh.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00541___ldh
# 2: RBAM_003290___ldh
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 977
# Identity:     772/977 (79.0%)
# Similarity:   772/977 (79.0%)
# Gaps:          34/977 ( 3.5%)
# Score: 3079.5
# 
#
#=======================================

BSNT_00541___      1 ATGATGAACAAACATGTAAATAAAGTAGCTTTAATCGGAGCGGGTTTTGT     50
                     |||||||||.|||..||.||.||||||||.|||||||||||.||||||||
RBAM_003290__      1 ATGATGAACGAACGAGTGAACAAAGTAGCATTAATCGGAGCAGGTTTTGT     50

BSNT_00541___     51 TGGAAGCAGTTATGCATTTGCGTTAATTAACCAAGGGATCACAGATGAGC    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_003290__     51 TGGAAGCAGTTATGCATTTGCGTTAATTAACCAAGGGATCACAGATGAGC    100

BSNT_00541___    101 TTGTGGTCATTGATGTAAATAAAGAAAAAGCAATGGGCGATGTGATGGAT    150
                     |||||.|||||||||||||||.|||||||||.|||||.|||||.||||||
RBAM_003290__    101 TTGTGATCATTGATGTAAATAGAGAAAAAGCCATGGGAGATGTCATGGAT    150

BSNT_00541___    151 TTAAACCACGGAAAGGCGTTTGCGCCACAACCGGTCAAAACATCTTACGG    200
                     |||||.|||||||||||.||||||||.||.|||||||||||.||||||||
RBAM_003290__    151 TTAAATCACGGAAAGGCATTTGCGCCTCATCCGGTCAAAACGTCTTACGG    200

BSNT_00541___    201 AACATATGAAGACTGCAAGGATGCTGATATTGTCTGCATTTGCGCCGGAG    250
                     .||||||||.||.|||||||||||.|||||.||.|||||.||.||.||.|
RBAM_003290__    201 CACATATGAGGATTGCAAGGATGCCGATATCGTGTGCATCTGTGCAGGGG    250

BSNT_00541___    251 CAAACCAAAAACCTGGTGAGACACGCCTTGAATTAGTAGAAAAGAA-CTT    299
                     |.||.||||||||.||.||.||..|.|||||..|.||.|||||.|| ||.
RBAM_003290__    251 CCAATCAAAAACCGGGCGAAACGAGACTTGAGCTGGTCGAAAAAAATCTC    300

BSNT_00541___    300 GAAGATTTTCAAAGGCATCGTCAGTGAGGTCATGGCGAGCGGATTTGACG    349
                     | ..|||||.|||.||||.|||.||||.||.|||||.|||||||||||||
RBAM_003290__    301 G-CCATTTTTAAAAGCATTGTCGGTGAAGTAATGGCAAGCGGATTTGACG    349

BSNT_00541___    350 GCATTTTCTTAATCGCGACAAATCCGGTTGATATCCTGACTTACGCAACA    399
                     ||||.|||.|..|.||.|||||.|||||.||.||.||.||.||.||.||.
RBAM_003290__    350 GCATCTTCCTCGTTGCCACAAACCCGGTCGACATTCTCACCTATGCGACT    399

BSNT_00541___    400 TGGAAATTTAGCGGCCTGCCAAAAGAGCGGGTGATCGGAAGCGGCACAAC    449
                     ||||.|||.|||||||||||.|||||.||.||.|||||.||||||||.||
RBAM_003290__    400 TGGACATTCAGCGGCCTGCCGAAAGAACGCGTCATCGGCAGCGGCACGAC    449

BSNT_00541___    450 ACTAGATTCTGCGAGATTCCGTTTCATGCTGAGCGAATACTTTGGCGCAG    499
                     |||.|||||||||.|||||||||..||||||||.||||||||.||.||.|
RBAM_003290__    450 ACTGGATTCTGCGCGATTCCGTTATATGCTGAGTGAATACTTCGGAGCCG    499

BSNT_00541___    500 CGCCTCAAAACGTACACGCGCATATTATCGGAGAGCACGGCGACACAGAG    549
                     |.||.||||||||||||||.||.||||||||.|||||||||||.||.|||
RBAM_003290__    500 CTCCGCAAAACGTACACGCCCACATTATCGGCGAGCACGGCGATACCGAG    549

BSNT_00541___    550 CTTCCTGTTTGGAGCCACGCGAATGTCGGCGGTGTGCCGGT-CAGTGAAC    598
                     ||.|||||.|||||.|||||.|||.|||||||.|||||||| ||| .||.
RBAM_003290__    550 CTCCCTGTATGGAGTCACGCCAATATCGGCGGAGTGCCGGTGCAG-CAAT    598

BSNT_00541___    599 TCGTTGAGAAAAACGATGCGTACAAACAAGAGGAGCTGGACCAAATTGTA    648
                     |..|.||||||.|.|..||.||||||||.||.||||||||.||.||.||.
RBAM_003290__    599 TGCTGGAGAAACATGCAGCTTACAAACAGGACGAGCTGGATCAGATCGTT    648

BSNT_00541___    649 GATGATGTGAAAAACGCAGCTTACCATATCATTGAGAAAAAAGGCGCGAC    698
                     ||.|||||||||||||||||.||.|||||.||.|||||||||||||||||
RBAM_003290__    649 GACGATGTGAAAAACGCAGCCTATCATATTATCGAGAAAAAAGGCGCGAC    698

BSNT_00541___    699 TTATTATGGGGTTGCGATGAGTCTTGCTCGCATTACAAAAGCCATTCTTC    748
                     .|||||.||.||.||||||||.||.||.|||||.||||||||.|||.|.|
RBAM_003290__    699 ATATTACGGAGTGGCGATGAGCCTCGCCCGCATCACAAAAGCGATTTTGC    748

BSNT_00541___    749 ATAATGAAAACAGCATATTAACTGTCAGCACATATTTGGACGGGCAATAC    798
                     .|||||||||||||||.|||||.||||||||||||.|||||||.||||||
RBAM_003290__    749 GTAATGAAAACAGCATTTTAACCGTCAGCACATATCTGGACGGCCAATAC    798

BSNT_00541___    799 GGTGCAGATGACGTGTACATCGGTGTGCCGGCTGTCGTGAACCGCGGA--    846
                     ||||.|.|.|||||.|..|||||.||.|||||.|||||.||  .||||  
RBAM_003290__    799 GGTGTAAACGACGTCTTTATCGGCGTTCCGGCCGTCGTCAA--TCGGAAC    846

BSNT_00541___    847 GGGATCGCAGGTATCACTGAGC-TGAACTTAAATGAGAAAGAAAAAGAAC    895
                     ||.||.||||||.|.||.||.| |||.||       |||.||||.|||||
RBAM_003290__    847 GGCATTGCAGGTGTGACGGAACTTGAGCT-------GAATGAAACAGAAC    889

BSNT_00541___    896 AG------TTCCTTCACAGCGCCGGCGTCCTTAAAAACATTTTAAAACCT    939
                     ||      |||...|.||||||...|||.||.|||.|.|||.|....||.
RBAM_003290__    890 AGGCTCAATTCAGCCGCAGCGCAAACGTGCTGAAAGATATTCTCGCTCCG    939

BSNT_00541___    940 CATTTTGCAGAACAAAAAGTCAACTAA    966
                     |||||.|||||..||            
RBAM_003290__    940 CATTTCGCAGAGTAA------------    954


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