Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00502 and RBAM_003090

See DNA alignment / Visit BSNT_00502 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:14
# Commandline: needle
#    -asequence pep-align/BSNT_00502___ycdF.1.9828.seq
#    -bsequence pep-align/RBAM_003090___ycdF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00502___ycdF-RBAM_003090___ycdF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00502___ycdF-RBAM_003090___ycdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00502___ycdF
# 2: RBAM_003090___ycdF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 259
# Identity:     211/259 (81.5%)
# Similarity:   228/259 (88.0%)
# Gaps:           1/259 ( 0.4%)
# Score: 1070.0
# 
#
#=======================================

BSNT_00502___      1 MYKDLTGKTAIVTGSSKGIGKAIAERFGQEKMNVVVNYHSDPSGADETLE     50
                     ||:||.||||||||||||||||||||||:|:|||||||..|.:||:|..:
RBAM_003090__      1 MYQDLQGKTAIVTGSSKGIGKAIAERFGKERMNVVVNYLGDSAGAEEAAD     50

BSNT_00502___     51 IIKQNGGKAVAVEADVSKEEGIQALLDTALEHFGTLDVMVNNSGFNGDEA    100
                     ||::.||:||.|:||||.|||||||.|.|.||||.:|||||||||||.||
RBAM_003090__     51 IIEKAGGRAVTVKADVSSEEGIQALFDAAQEHFGGVDVMVNNSGFNGTEA    100

BSNT_00502___    101 MPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQ    150
                     |||||||||||||||||||||||||||||.||:....||.||||||||||
RBAM_003090__    101 MPHEMSLEDWQRVIDVNVTGTFLGAKAALKHMLDRGKKGTVLNISSVHQQ    150

BSNT_00502___    151 IPRPVNVQYSTSKGGIKMMTETLALNYADKEIRVNAIAPGTIATESNVDT    200
                     ||||.|||||.|||||||||||:|||||||.||||||||||||||||.|.
RBAM_003090__    151 IPRPENVQYSASKGGIKMMTETMALNYADKGIRVNAIAPGTIATESNKDL    200

BSNT_00502___    201 KKEESRQKQLKKIPMQAFGKPEEVAAAAAWLVSEEASYVTGTTLFVDGGM    250
                     :.|..:|.|||||||.||||||||||||||:|||||||||||||||||||
RBAM_003090__    201 EDETHKQAQLKKIPMNAFGKPEEVAAAAAWMVSEEASYVTGTTLFVDGGM    250

BSNT_00502___    251 TLYPSQLE-    258
                     |||||||: 
RBAM_003090__    251 TLYPSQLDR    259


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