Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00502 and RBAM_003090

See Amino acid alignment / Visit BSNT_00502 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:15
# Commandline: needle
#    -asequence dna-align/BSNT_00502___ycdF.1.9828.seq
#    -bsequence dna-align/RBAM_003090___ycdF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00502___ycdF-RBAM_003090___ycdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00502___ycdF-RBAM_003090___ycdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00502___ycdF
# 2: RBAM_003090___ycdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 806
# Identity:     587/806 (72.8%)
# Similarity:   587/806 (72.8%)
# Gaps:          55/806 ( 6.8%)
# Score: 2109.0
# 
#
#=======================================

BSNT_00502___      1 ATGTACAAAGATTTAACCGGAAAAACAGCGATTGTGACAGGGTCTTCAAA     50
                     |||||..|.||||||...||.||||||||.||.||.|||||.|||||.||
RBAM_003090__      1 ATGTATCAGGATTTACAGGGGAAAACAGCAATCGTAACAGGTTCTTCGAA     50

BSNT_00502___     51 AGGAATCGGGAAAGCCATTGCGGAACGGTTCGGACAGGAGAAAATGAATG    100
                     |||||||||.|||||||||||.|||||.|||||..||||....|||||||
RBAM_003090__     51 AGGAATCGGAAAAGCCATTGCCGAACGCTTCGGCAAGGAACGGATGAATG    100

BSNT_00502___    101 TTGTTGTAAATTACCACAGCGA-CCCGTCTGGAGCAGATGAAACTCTGGA    149
                     |.|||||.||.||||.|.|.|| .||| |.|||||.||.|||.|...|||
RBAM_003090__    101 TGGTTGTGAACTACCTCGGTGATTCCG-CCGGAGCGGAAGAAGCGGCGGA    149

BSNT_00502___    150 AATCATT----AAGCAGAACGGAGGGAAAGCCGTCGCAGTTGAGGCGGAC    195
                     .||||||    ||||    .|||||...|||||||.|.||..|.||.||.
RBAM_003090__    150 CATCATTGAGAAAGC----GGGAGGCCGAGCCGTCACCGTAAAAGCCGAT    195

BSNT_00502___    196 GTGTCAAAAGAAGAGGGGATTCAGGCGCTCTTGGA-----CACAGCTTTA    240
                     ||.||...||||||.||||||||||||||.||.||     |.|||     
RBAM_003090__    196 GTATCCTCAGAAGAAGGGATTCAGGCGCTGTTTGATGCCGCCCAG-----    240

BSNT_00502___    241 GAGCATTTCGGCACGCTCGATGTGATGGTAAACAACTCCGGTTTTAACGG    290
                     |||||||||||.....|.|||||||||||.|||||.|||||.||||||||
RBAM_003090__    241 GAGCATTTCGGGGGTGTGGATGTGATGGTCAACAATTCCGGCTTTAACGG    290

BSNT_00502___    291 TGA-TGAGGCGATGCCGCATGAGATGAGTCTTGAAGATTGGCAGAGAGTA    339
                      || .||.||||||||.|||||.|||||.||.||.||||||||.||.||.
RBAM_003090__    291 -GACCGAAGCGATGCCCCATGAAATGAGCCTGGAGGATTGGCAAAGGGTC    339

BSNT_00502___    340 ATTGATGTCAATGTTACCGGAACCTTTCTGGGAGCGAAAGCAGCACTTAA    389
                     ||.||.|||||.||.|||||.||||||.||||.||||||||.|||||.||
RBAM_003090__    340 ATCGACGTCAACGTGACCGGCACCTTTTTGGGGGCGAAAGCGGCACTGAA    389

BSNT_00502___    390 CCACATGAT--------GAAAAACAATATCAAGGGCAA-TGTGCTGAATA    430
                     .||.|||.|        ||||||       ||||  || .||..|.||.|
RBAM_003090__    390 ACATATGCTCGATCGCGGAAAAA-------AAGG--AACGGTCTTAAACA    430

BSNT_00502___    431 TCTCAAGTGTTCATCAGCAGATTCCGCGCCCTGTCAACGTTCAGTATTCC    480
                     |.||.||.|||||||||||.||.||.||.||||..|||||.|||||.||.
RBAM_003090__    431 TATCGAGCGTTCATCAGCAAATACCCCGTCCTGAAAACGTGCAGTACTCG    480

BSNT_00502___    481 ACATCCAAAGGCGGCATCAAGATGATGACGGAAACGCTGGCGCTCAATTA    530
                     .|||||||||||||.|||||.|||||||||||||||.|||||||||||||
RBAM_003090__    481 GCATCCAAAGGCGGGATCAAAATGATGACGGAAACGATGGCGCTCAATTA    530

BSNT_00502___    531 TGCGGATAAGGAAATCCGCGTCAATGCGATAGCGCCCGGCACCATTGCCA    580
                     .||.||.||.|..|||||.||.|||||.||.||.||||||||.||.||||
RBAM_003090__    531 CGCAGACAAAGGCATCCGGGTGAATGCCATCGCTCCCGGCACGATCGCCA    580

BSNT_00502___    581 CAGAATCAAATGTTGATACGAAAAAGGAAGAGAGCAGGCAAAAA------    624
                     |.||.||.|||...|||..|.||.|.|||      |..||.|||      
RBAM_003090__    581 CGGAGTCCAATAAGGATCTGGAAGATGAA------ACACATAAACAGGCC    624

BSNT_00502___    625 CAATTGAAAAAAATCCCGATGCAAGCCTTCGGAAAGCCTGAAGAAGTGGC    674
                     ||..||||||||||.||||||.|.|||||||||||.||.||||||||.||
RBAM_003090__    625 CAGCTGAAAAAAATTCCGATGAACGCCTTCGGAAAACCGGAAGAAGTCGC    674

BSNT_00502___    675 GGCAGCAGCGGCTTGGCTCGTATCTGAGGAAGCAAGCTATGTGACCGGCA    724
                     .||.||.||.||.|||.|.||.||.||.|||||.||.||.||.|||||.|
RBAM_003090__    675 CGCGGCCGCCGCATGGATGGTGTCGGAAGAAGCGAGTTACGTAACCGGAA    724

BSNT_00502___    725 CAACACTTTTCGTCGATGGCGGGATGACACTTTATCCGTCTCAGCTTGA-    773
                     |.||||||||||||||.||.||.|||||.|||||||||||||||||.|| 
RBAM_003090__    725 CGACACTTTTCGTCGACGGAGGCATGACGCTTTATCCGTCTCAGCTGGAC    774

BSNT_00502___    774 --ATAG    777
                       |||.
RBAM_003090__    775 AGATAA    780


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