Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00499 and RBAM_003080

See DNA alignment / Visit BSNT_00499 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:14
# Commandline: needle
#    -asequence pep-align/BSNT_00499.1.9828.seq
#    -bsequence pep-align/RBAM_003080___rapJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00499-RBAM_003080___rapJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00499-RBAM_003080___rapJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00499
# 2: RBAM_003080___rapJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 373
# Identity:     218/373 (58.4%)
# Similarity:   251/373 (67.3%)
# Gaps:          83/373 (22.3%)
# Score: 1158.0
# 
#
#=======================================

BSNT_00499         1 MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLL     50
                     |::||||||||||:|||||||||||||||||||:||:|:|||||||||||
RBAM_003080__      1 MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLL     50

BSNT_00499        51 LYFSLMEFRHRIMLDKLMPVKDSDTKPPFSDMLNEIESNQQKLTGLLEYY    100
                     |||||||||||||||||.|:||.|.:||||:||.|||.||||||||||||
RBAM_003080__     51 LYFSLMEFRHRIMLDKLKPMKDGDCQPPFSEMLTEIEMNQQKLTGLLEYY    100

BSNT_00499       101 FYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYY    150
                     ||||||||||||||||.||.|||.||||||||||:|||||||:|::||||
RBAM_003080__    101 FYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYY    150

BSNT_00499       151 HIKQTYFSMNYASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKAL    200
                     |||||:||||||.||||||.||||||.|||||:|||||||.|...|:|||
RBAM_003080__    151 HIKQTFFSMNYAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKAL    200

BSNT_00499       201 THLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAEGYFKTAAAIF    250
                     .:|..||:||.:|::.||||||:||:|||.|||||:.:|...|:.|||.|
RBAM_003080__    201 EYLECALEHAERLDDQYMIAAAFYNIGHCMYSLGDFCKAAEDFERAAAGF    250

BSNT_00499       251 EEHNFQQAVQAVFSLTHIYCKEGKYDKAAEAYDRGIKERG----------    290
                     |.|:|:|.:||||||||||.|..||.:||.:..||::...          
RBAM_003080__    251 EAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTK    300

BSNT_00499       290 --------------------------------------------------    290
                                                                       
RBAM_003080__    301 FRLIKELYQGEGGQDSLKEYFDILESKELLADTEELLQDAAHFFHKRENY    350

BSNT_00499       290 -----------------------    290
                                            
RBAM_003080__    351 KAASYFFSRLVGVQKRLQMNNYA    373


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