Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00499 and RBAM_003080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_00499.1.9828.seq
# -bsequence dna-align/RBAM_003080___rapJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00499-RBAM_003080___rapJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00499-RBAM_003080___rapJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00499
# 2: RBAM_003080___rapJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1138
# Identity: 668/1138 (58.7%)
# Similarity: 668/1138 (58.7%)
# Gaps: 281/1138 (24.7%)
# Score: 2464.0
#
#
#=======================================
BSNT_00499 1 ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATG 50
||||.|.|.|||||||||||.||||||||.||.||||||.||||||||||
RBAM_003080__ 1 ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATG 50
BSNT_00499 51 GTACAAGCTCATTCGCGCATTTGAAGCAGATCAAGCAGAAGCGTTAAAGC 100
|||.|||||.||.|||||.||||||||.||||||||.||||||.|.||||
RBAM_003080__ 51 GTATAAGCTGATCCGCGCGTTTGAAGCCGATCAAGCTGAAGCGCTGAAGC 100
BSNT_00499 101 AGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTT 150
.|||||||.||||.||..|.|||||||||||||||||||||||.||..|.
RBAM_003080__ 101 GGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTG 150
BSNT_00499 151 TTATATTTTTCTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCT 200
||.||||||||.|||||||||||.|||||.||.||||||||.|||||..|
RBAM_003080__ 151 TTGTATTTTTCATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATT 200
BSNT_00499 201 GATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCTGATATGCTGA 250
.|..||..||||||||.|||||..|.||||||||||||||||.|||||.|
RBAM_003080__ 201 AAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCTGAAATGCTCA 250
BSNT_00499 251 ACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTAC 300
..||.|||||.|..||.||||||||.||.||.||||||||||||||.||.
RBAM_003080__ 251 CTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTAT 300
BSNT_00499 301 TTTTATTATTTCAGAGGAATGTACGAATTCAAGCAGAAAAATTTCATATT 350
|||||.||||||||.||||||||.|||||.|||||||||||.|||||.|.
RBAM_003080__ 301 TTTTACTATTTCAGGGGAATGTATGAATTTAAGCAGAAAAACTTCATCTC 350
BSNT_00499 351 AGCGATCGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG 400
||||||....||||||||.|..||.|||||||||||.||.|||||.||.|
RBAM_003080__ 351 AGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG 400
BSNT_00499 401 ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTAT 450
||||.||.||.|||||.||||||||.|.||||.|..|.||.|||||.|||
RBAM_003080__ 401 ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTAT 450
BSNT_00499 451 CACATCAAACAAACGTATTTTTCCATGAATTATGCGAGCCAGGCGCTTGA 500
||.|||||.||.||.|..|||||.||||||||.|||.|.|||||||||||
RBAM_003080__ 451 CATATCAAGCAGACTTTCTTTTCGATGAATTACGCGGGGCAGGCGCTTGA 500
BSNT_00499 501 TATCTATACGAAATATGAGCTGTACGGTCGCCGCCGGGTTCAGTGTGAAT 550
|||.||.|.|||||||||..|.|||||.....|..||||.|||||..|||
RBAM_003080__ 501 TATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAAT 550
BSNT_00499 551 TTATCATCGCCGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTG 600
|||||||.|||||||||.|||..||.|...|.||.|||.|||||||.|||
RBAM_003080__ 551 TTATCATTGCCGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTG 600
BSNT_00499 601 ----ACCCACTTGTGCA--GCGCTTTAGATCATGCCAGGCAGCTTGAAGA 644
||| |..| ||||.||.||.||.||...||.||||||.||
RBAM_003080__ 601 GAATACC------TCGAATGCGCCTTGGAACACGCGGAGCGGCTTGATGA 644
BSNT_00499 645 AGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACA 694
....||.|||||.||.||.||||.|||||||.||||.|||||||.|||||
RBAM_003080__ 645 TCAATATATGATTGCTGCGGCCTTTTATAATATCGGGCACTGTATGTACA 694
BSNT_00499 695 GTCTGGGTGAC---TACAAAGAAGCGGAGGGCTATTTCAAAACAGCCGCC 741
||||||||||| |.|||.|..||||||| ||||..||...||.||.
RBAM_003080__ 695 GTCTGGGTGACTTTTGCAAGGCGGCGGAGG---ATTTTGAACGGGCGGCT 741
BSNT_00499 742 GCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTC 791
|||...|||||.|..||||.|||.|.|||.|...|.||.|||||.|||||
RBAM_003080__ 742 GCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTC 791
BSNT_00499 792 ACTGACCCATATCTACTGTAAAGAGGGAAAATAC-GACAAG--GCAG-CA 837
|||.||.||||||||||.||||..||.||||||| |..||| ||.| ||
RBAM_003080__ 792 ACTCACGCATATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCA 841
BSNT_00499 838 GAGGCGTATGATCGCGGG--ATAAAAGAGCGCGGCTGA------------ 873
|..||| |||||| ||.|.| ||||||||.||
RBAM_003080__ 842 GCTGCG------CGCGGGGCATGAGA-AGCGCGGCGGAGTGGGAAGATGA 884
BSNT_00499 873 -------------------------------------------------- 873
RBAM_003080__ 885 GATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAG 934
BSNT_00499 873 -------------------------------------------------- 873
RBAM_003080__ 935 GCGGACAGGATTCGCTCAAAGAGTATTTTGACATTCTGGAATCAAAAGAG 984
BSNT_00499 873 -------------------------------------------------- 873
RBAM_003080__ 985 CTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCA 1034
BSNT_00499 873 -------------------------------------------------- 873
RBAM_003080__ 1035 TAAACGGGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCG 1084
BSNT_00499 873 -------------------------------------- 873
RBAM_003080__ 1085 GCGTGCAAAAAAGGCTGCAAATGAACAACTACGCATAA 1122
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