Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00492 and RBAM_003040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence pep-align/BSNT_00492___ycdA.1.9828.seq
# -bsequence pep-align/RBAM_003040___ycdA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00492___ycdA-RBAM_003040___ycdA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00492___ycdA-RBAM_003040___ycdA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00492___ycdA
# 2: RBAM_003040___ycdA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 365
# Identity: 159/365 (43.6%)
# Similarity: 216/365 (59.2%)
# Gaps: 39/365 (10.7%)
# Score: 689.0
#
#
#=======================================
BSNT_00492___ 1 MRRKNECFRKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQ 50
...||..|||.||||..|||||| |:||. .:||.| |:
RBAM_003040__ 1 ------MSIKKMSAVFFILLLTAFTAACS-SETSG-GQESST------AK 36
BSNT_00492___ 51 VKIKDVSYTLPSKYDKSTSDD---QLVLKVNVAVKNTGKDPLNVDSMDFT 97
||||:.:: :.||| ...|||.|.|||||||||.|.|.||:
RBAM_003040__ 37 VKIKETAW--------AASDDTEHPAALKVTVTVKNTGKDPLTVKSSDFS 78
BSNT_00492___ 98 LYQGDTKMSDTDPEDYSEKLQVSTINADKSVEGNLFFVVDKGKQYELNYT 147
|||.|.|.:.||.||. :|..|::|.|:|.|||:|..|:||.|||.|.
RBAM_003040__ 79 LYQDDAKTAKTDKEDL---MQSGTLHAGKTVTGNLYFTADEGKSYELVYQ 125
BSNT_00492___ 148 PKSYGDKKPKSVTFKIDGKDKKILTTADKLQDSAKALSAYVDVLLFGKDN 197
|:: .|.||.|...|:.| |.::...|.|.|||||:||:|:||.|
RBAM_003040__ 126 PQA-KDAKPLSYKLKVKG------TASNAKPDPADALSAYIDVMLYGKHN 168
BSNT_00492___ 198 ADFEKITGANKNEIVNDFNESAKDGYLSASGLSSTYADSKALDNIVNGIK 247
.||.::||.|:......:.||||..:::::|:|...|||||:..|::.:.
RBAM_003040__ 169 KDFTRLTGVNEKMTAAAYQESAKASFIASAGISQEQADSKAISAIIDAMS 218
BSNT_00492___ 248 EGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSLSDRIEDKVKDYYSKN 297
..|..|:.::..|.|:|..:|::||.|.|:|.|.|:.:::|:|:||..|:
RBAM_003040__ 219 SALRDNTELKVHTKSMSGKKAVLEAKVTPLDMSPLAGQLQDRVQDYAGKH 268
BSNT_00492___ 298 SSASYEEAVKYALQVYPEEFKKLGPASSEKTVEVKMKKNDIDQWQLDMD- 346
..|...|.|.:.|.||||||.:|.||||..|.|::||||...||.||.|
RBAM_003040__ 269 PDADENEIVSHLLSVYPEEFMRLKPASSSVTREIEMKKNARGQWYLDTDA 318
BSNT_00492___ 347 DYRAAELVEAFIKE- 360
|... |.|||:|.
RBAM_003040__ 319 DLEG--LTEAFLKTS 331
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