Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00492 and RBAM_003040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_00492___ycdA.1.9828.seq
# -bsequence dna-align/RBAM_003040___ycdA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00492___ycdA-RBAM_003040___ycdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00492___ycdA-RBAM_003040___ycdA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00492___ycdA
# 2: RBAM_003040___ycdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1216
# Identity: 633/1216 (52.1%)
# Similarity: 633/1216 (52.1%)
# Gaps: 353/1216 (29.0%)
# Score: 1395.0
#
#
#=======================================
BSNT_00492___ 1 TTGAGGAGGAAAAATGAATGTTTCAGAAAAAAAACGTACGC--TGTTTTC 48
||| |.||..|||||||.|..||| ||||||
RBAM_003040__ 1 -----------------ATG-TCCATCAAAAAAATGAGCGCCGTGTTTT- 31
BSNT_00492___ 49 CTAATTCTTCTGCTGATGATGTTTACAGCTGCTTGTTCCGGCAGCAAAAC 98
|.|||||.||.||.|.|...|||||.||.||.|| |.|||||.||||
RBAM_003040__ 32 -TCATTCTGCTTCTCACGGCATTTACCGCCGCGTG---CAGCAGCGAAAC 77
BSNT_00492___ 99 AAGC-GCGGAGAAGAAAGAATCA-GAAACAGAAAAAAGCTCAGATATAGC 146
.||| ||||..|.|||||.|.|| | ||
RBAM_003040__ 78 GAGCGGCGGCCAGGAAAGCAGCACG-----------------------GC 104
BSNT_00492___ 147 TCAAGTCAAAATCAAGGATGTCTCTTATAC-GCTTCCGTCTAAATATGAT 195
..||||.|||||.||.| |.|| || |||
RBAM_003040__ 105 GAAAGTGAAAATAAAAG---------AGACGGC------------ATG-- 131
BSNT_00492___ 196 AAGTCCACTTCAGATGA----------CCAGCTTGTGTTAAAAGTCAATG 235
|.||.|||||||.|| ||.|| .|.|.|.|||||.|..|
RBAM_003040__ 132 --GGCCGCTTCAGACGATACTGAACATCCGGC-CGCGCTGAAAGTAACGG 178
BSNT_00492___ 236 TCGCGGTGAAAAACACAGGAAAAGACCCGCTGAATGTAGACAGTATGGAT 285
||.|.||.|||||.||.||.|||||||||||.|..||..|.||.|..||.
RBAM_003040__ 179 TCACCGTCAAAAATACGGGCAAAGACCCGCTTACCGTCAAAAGCAGCGAC 228
BSNT_00492___ 286 TTCACATTGTATCAAGGTGATACCAAAATGTCTGACACAGACC----CTG 331
|||.|..|.|||||.|.|||..|.|||| |.|.|| ||||| ..|
RBAM_003040__ 229 TTCTCGCTTTATCAGGATGACGCGAAAA---CAGCCA-AGACCGATAAGG 274
BSNT_00492___ 332 AAGACT------ATAGCGAAAAGCTTCAAGTCAGCACGATTAACGCTGAC 375
|||||| |.||||..|.||||||.| ||..||| |||
RBAM_003040__ 275 AAGACTTGATGCAGAGCGGCACGCTTCATG------CGGGTAA----GAC 314
BSNT_00492___ 376 AAATCCGTTGA-AGGAAATCTTTTCTTCGTTGTAGATAAAGGCAAGCAAT 424
| .||| .||.|||||.|.||||...|..||..|||||||....|
RBAM_003040__ 315 A------GTGACGGGCAATCTGTACTTCACGGCTGACGAAGGCAAATCCT 358
BSNT_00492___ 425 ACGAGCT--TAACTATACGCCGAAATCTTACGGTGATAAAAAACCAAAAT 472
|.||..| || |||..||||.| |..||||.||...||.
RBAM_003040__ 359 ATGAATTGGTA--TATCAGCCGCA----------GGCAAAAGACGCGAAG 396
BSNT_00492___ 473 CAGTTA-CTTTTAAAATTGACGGAAAAGACAAAAAAATCCTGACGACGGC 521
|..||| |||.||||.| .||||.|||| |||
RBAM_003040__ 397 CCTTTATCTTATAAACT------GAAAGTCAAA--------------GGC 426
BSNT_00492___ 522 AGATAAG-CTCCAAGATTCTGCAAAA---------------GCGTTATCA 555
| .|| |||||| .|||||| ||.|||||.
RBAM_003040__ 427 A---CAGCCTCCAA-----CGCAAAACCTGACCCAGCGGACGCATTATCC 468
BSNT_00492___ 556 GCTTATGTTGATGTCCTTCTTTTCGGCAAAG----ATAACGCCGATTTCG 601
||.||..|||||||..|.||.|.|||| ||| |||| .||||
RBAM_003040__ 469 GCATACATTGATGTGATGCTGTACGGC-AAGCACAATAA---AGATT--- 511
BSNT_00492___ 602 AAAAAATCACCGGCGCTAAC----AAAAATGAAATTGTAAATG------- 640
|||||.|| ||.|| ..|||||||| |||||
RBAM_003040__ 512 ------TCACCCGC-CTGACCGGTGTAAATGAAA----AAATGACGGCCG 550
BSNT_00492___ 641 ----ATTTCAATGAATCAGCCAAAGACGG--TTATCTCTCAGCTTCCGGC 684
||.|| |.|||||.||.||||.|.| |||||.|| .||.|.|||
RBAM_003040__ 551 CCGCATATC-AGGAATCGGCGAAAGCCAGCTTTATCGCT--TCTGCAGGC 597
BSNT_00492___ 685 CTTT--CCAGCACATATGCGGA--CAGCAAAGCGCTT---GATAATATCG 727
.|.| |.||.|| |.||||| || |||||..|| |.||.|||
RBAM_003040__ 598 ATATCACAAGAAC--AGGCGGATTCA--AAAGCCATTTCCGCTATTAT-- 641
BSNT_00492___ 728 TGA----ATGGCAT-------------TAA-AGAGGGATTAAG------- 752
||| |||.||| ||| |.||.|.|.|||
RBAM_003040__ 642 TGACGCCATGTCATCAGCGCTTCGGGATAACACAGAGCTCAAGGTGCATA 691
BSNT_00492___ 753 -CAAAAACTCTTCCAT-TCAAGCAAAAACGACTTCAATCTCTAAAGACGA 800
||| .||||| |||.|||||| |
RBAM_003040__ 692 CCAA------GTCCATGTCAGGCAAAA----------------------A 713
BSNT_00492___ 801 AGCAATTGTTGAAGCCACAGTTAAACCTGTAGATGCATCTTCTCTTTCAG 850
|||..|..|||||||.|.|||.|..||..|.|||...|||.|.|||.|.|
RBAM_003040__ 714 AGCCGTCCTTGAAGCAAAAGTGACGCCGCTTGATATGTCTCCGCTTGCGG 763
BSNT_00492___ 851 ACC-GCATCGAAGACAAAGTGAAAGACTACTACAGTAAA-AACTCTAGTG 898
.|| || |..|||||...|||.||||||| |.|.|.||| .||.||..||
RBAM_003040__ 764 GCCAGC-TGCAAGACCGCGTGCAAGACTA-TGCCGGAAAGCACCCTGATG 811
BSNT_00492___ 899 CCAGCTATGAGGAGGCAGTGAAAT--------ACGCGCTTCAAGTCTATC 940
| |||.|| .|..||||| ||..||||...|||||||
RBAM_003040__ 812 C------TGATGA--AAACGAAATTGTCAGCCACCTGCTTTCTGTCTATC 853
BSNT_00492___ 941 CTGAGGAATTCA--------AAAAGCTTGGACCTGCTTCATCTGAAAAAA 982
|.||.||.||.| || |||.|||||.||| .
RBAM_003040__ 854 CGGAAGAGTTTATGCGCCTGAA--------ACCGGCTTCTTCT------T 889
BSNT_00492___ 983 CAGTT-GAAGTGAAA-----ATGAAGAAAAATGACATCGACCAATGGCAG 1026
|.||| .|||.|||| |||||||||||.|.|..||.|||.|||.|.
RBAM_003040__ 890 CTGTTACAAGAGAAATTGAGATGAAGAAAAACGCCCGCGGCCAGTGGTAT 939
BSNT_00492___ 1027 CTTGATATGGATGATTACAGAGC-AGCAGAATTAGTC-GAAGCATTCATC 1074
||.||||..||.| |.||.| .|.||.||| |.| |||||.||..|.
RBAM_003040__ 940 CTGGATACAGACG----CCGATCTGGAAGGATT-GACAGAAGCGTTTTTG 984
BSNT_00492___ 1075 AAA-------GAATAA 1083
||| ||
RBAM_003040__ 985 AAAACGTCCTGA---- 996
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