Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00434 and RBAM_002820

See DNA alignment / Visit BSNT_00434 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:12
# Commandline: needle
#    -asequence pep-align/BSNT_00434___ycbB.1.9828.seq
#    -bsequence pep-align/RBAM_002820___ycbB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00434___ycbB-RBAM_002820___ycbB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00434___ycbB-RBAM_002820___ycbB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00434___ycbB
# 2: RBAM_002820___ycbB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 320
# Identity:     234/320 (73.1%)
# Similarity:   270/320 (84.4%)
# Gaps:          11/320 ( 3.4%)
# Score: 1179.0
# 
#
#=======================================

BSNT_00434___      1 MRFFIADDDRAVRSILRQIIEDEDLGEAVGEADDGSQVEGHMLQFKQIDI     50
                     |||||||||||:||||:|:||||||||.||||:||||:|||.|.|||:||
RBAM_002820__      1 MRFFIADDDRAIRSILKQMIEDEDLGEVVGEAEDGSQIEGHYLHFKQVDI     50

BSNT_00434___     51 LLIDLLMPGRDGIETIRQIQNTYSGKIIMISQVEAKEMVGEAYSLGIEYF    100
                     |||||||||||||||||.:|.:|:||.:||||||||||||||||||||||
RBAM_002820__     51 LLIDLLMPGRDGIETIRHLQGSYNGKAVMISQVEAKEMVGEAYSLGIEYF    100

BSNT_00434___    101 IHKPINRIEIVTVLQKVKERIELEHSIGAIQHSLSRLVNRTE-RKARPQQ    149
                     ||||||:|||||||:|||||||||.|||.||||||||:.|.| :|:.|..
RBAM_002820__    101 IHKPINKIEIVTVLRKVKERIELETSIGDIQHSLSRLIQRNEPKKSGPGG    150

BSNT_00434___    150 KSDSGLKEAGTFLLSELGMMGEGGAHDLMAVLQYLAEHEQSEPHEKQSPS    199
                     ..:..:||.|.|||||||::||.|||||||||.||.|.||:   |:..||
RBAM_002820__    151 MREKSIKETGKFLLSELGIVGESGAHDLMAVLHYLFEDEQA---ERNIPS    197

BSNT_00434___    200 LKQIFTQVAVRKLGTGASQTEVNREMKASEQRIRRAIIHSLHHFASLGTT    249
                     |||:||.||:||||..|:|.|||||:||||||||||:||||:||||||||
RBAM_002820__    198 LKQMFTNVAIRKLGPAAAQAEVNREIKASEQRIRRAVIHSLNHFASLGTT    247

BSNT_00434___    250 DFSNPKFETYASKFFDFPVVSQKIKELQSKDAKPLAPARINMKKFIHVFF    299
                     ||||||||.|||||||||.||:::||:|:|:..||:|.::||||||||||
RBAM_002820__    248 DFSNPKFEYYASKFFDFPAVSKRMKEMQAKETVPLSPVKVNMKKFIHVFF    297

BSNT_00434___    300 LEAKLLHETMK-----QRRI    314
                     ||||.|.|..|     .|  
RBAM_002820__    298 LEAKDLREGSKFVSGGSR--    315


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