Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_00434 and RBAM_002820

See Amino acid alignment / Visit BSNT_00434 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:12
# Commandline: needle
#    -asequence dna-align/BSNT_00434___ycbB.1.9828.seq
#    -bsequence dna-align/RBAM_002820___ycbB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00434___ycbB-RBAM_002820___ycbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00434___ycbB-RBAM_002820___ycbB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00434___ycbB
# 2: RBAM_002820___ycbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 978
# Identity:     697/978 (71.3%)
# Similarity:   697/978 (71.3%)
# Gaps:          63/978 ( 6.4%)
# Score: 2401.0
# 
#
#=======================================

BSNT_00434___      1 ATGCGTTTTTTTATTGCAGATGATGACCGTGCAGTGCGGTCAATTTTAAG     50
                     ||||||||||||||.||.|||||||||||.||..|.||.||.|||||||.
RBAM_002820__      1 ATGCGTTTTTTTATAGCTGATGATGACCGGGCGATCCGTTCCATTTTAAA     50

BSNT_00434___     51 GCAGATCATTGAGGACGAAGATCTCGGGGAAGCTGTTGGTGAAGCTGACG    100
                     .|||||.||.||||||||.||..|.||.||||..||.|||||.||.||.|
RBAM_002820__     51 ACAGATGATCGAGGACGAGGACTTAGGAGAAGTCGTCGGTGAGGCAGAGG    100

BSNT_00434___    101 ACGGAAGCCAAGTGGAAGGGCA-TATGCTGCAATTTAAGCAGATTGATAT    149
                     ||||||||||..|.|||||||| ||| ||.||.|||||.||..|.|||||
RBAM_002820__    101 ACGGAAGCCAGATTGAAGGGCATTAT-CTCCATTTTAAACAAGTCGATAT    149

BSNT_00434___    150 TTTATTAATCGATCTGTTAATGCCCGGAAGAGACGGCATTGAGACGATTC    199
                     |||||||||.||||||.|.|||||.||..|.|||||.|||||||||||.|
RBAM_002820__    150 TTTATTAATTGATCTGCTGATGCCGGGTCGGGACGGGATTGAGACGATCC    199

BSNT_00434___    200 GTCAGATCCA-GAATACGTACTCCGGCAAAATC-ATAATGATCTCTCAAG    247
                     |.||..|.|| |.|| |||||..||| ||||.| .|.|||||.||.||.|
RBAM_002820__    200 GGCATCTTCAGGGAT-CGTACAACGG-AAAAGCGGTGATGATATCGCAGG    247

BSNT_00434___    248 TGGAGGCGAAGGAAATGGTCGGGGAAGCGTACTCGCTCGGCATCGAATAT    297
                     |||||||.|||||||||||.||.|||||.||.||.||||||||||||||.
RBAM_002820__    248 TGGAGGCAAAGGAAATGGTGGGAGAAGCTTATTCTCTCGGCATCGAATAC    297

BSNT_00434___    298 TTTATCCATAAGCCGATTAACCGCATTGAAATTGTCACGGTTCTCCAAAA    347
                     ||||||||.||.|||||.|||...||.||.||||||||.|||.|.|.|||
RBAM_002820__    298 TTTATCCACAAACCGATCAACAAAATCGAGATTGTCACCGTTTTGCGAAA    347

BSNT_00434___    348 GGTGAAGGAGCGGATCGAGCTTGAACACTCGATTGGAGCCATTCAGCATT    397
                     .||.||.||||||||.||.||.|||..||||||.||.|.|||.||.||.|
RBAM_002820__    348 AGTAAAAGAGCGGATTGAACTGGAAACCTCGATCGGCGACATCCAACACT    397

BSNT_00434___    398 CTCTAAGCCGGCTTGTCAATCGGACTGAACGG----AAAGCGCGTCCCCA    443
                     |..|||||||.|||.|..|.||||.|||.|.|    |||||| |.||...
RBAM_002820__    398 CGTTAAGCCGTCTTATTCAGCGGAATGAGCCGAAAAAAAGCG-GGCCGGG    446

BSNT_00434___    444 GCAGAAGAGTGA-----CAGCGGTTTAAAAGAGGCAGGAACATTCCTGTT    488
                     |..||.|.|.||     ||     .|.|||||..||||||.|||.||.||
RBAM_002820__    447 GGGGATGCGCGAGAAATCA-----ATCAAAGAAACAGGAAAATTTCTTTT    491

BSNT_00434___    489 GTCCGAGCTGGGCATGATGGGAGAAGGCGGCGCACATGATCTCATGGCGG    538
                     .||.||..|.|||||..||||||||.||||.||.|||||.||||||||.|
RBAM_002820__    492 ATCGGAATTAGGCATCGTGGGAGAAAGCGGGGCGCATGACCTCATGGCCG    541

BSNT_00434___    539 TCCTGCAGTATTTAGCAGAACACGAGCAATCCGAGCCGCACGAAAAACAA    588
                     ||||.||.||||||...||..|.||.|      ||.||   ||||.|.|.
RBAM_002820__    542 TCCTTCACTATTTATTTGAGGATGAAC------AGGCG---GAAAGAAAC    582

BSNT_00434___    589 AGCCCTTCGCTAAAACAAATATTCACCCAAGTAGCGGTACGGAAGCTGGG    638
                     |.|||.||..||||.||.||.||.||..|.||.||..|.|||||||||||
RBAM_002820__    583 ATCCCGTCTTTAAAGCAGATGTTTACAAACGTCGCCATCCGGAAGCTGGG    632

BSNT_00434___    639 GACAGGGGCCTCACAGACGGAAGTCAATCGCGAAATGAAAGCCTCGGAGC    688
                     |.|.|.|||..||||..|.||.||.||..|.|||||.|||||||||||.|
RBAM_002820__    633 GCCTGCGGCGGCACAAGCCGAGGTTAACAGGGAAATCAAAGCCTCGGAAC    682

BSNT_00434___    689 AGCGTATCCGCAGAGCGATTATTCATTCGCTGCACCATTTTGCTTCATTG    738
                     ||||.|||.|.||.||..|.|||||||||.|..|||||||.|||||||||
RBAM_002820__    683 AGCGGATCAGAAGGGCCGTCATTCATTCGTTAAACCATTTCGCTTCATTG    732

BSNT_00434___    739 GGCACAACTGATTTTTCGAATCCAAAATTTGAAACCTATGCATCGAAATT    788
                     |||||||||||||||||.||.||.|||||||||...||.||.||||||||
RBAM_002820__    733 GGCACAACTGATTTTTCAAACCCCAAATTTGAATATTACGCCTCGAAATT    782

BSNT_00434___    789 CTTTGATTTTCCGGTTGTCAGCCAGAAAATAAAAGAACTCCAATCCAAGG    838
                     |||||||||.||.|.|||||||.|||.|||.||||||.|.||..|.||||
RBAM_002820__    783 CTTTGATTTCCCCGCTGTCAGCAAGAGAATGAAAGAAATGCAGGCTAAGG    832

BSNT_00434___    839 ATGCAAAA-----CCCCTTGCACCTGCTAGAATAAATATGAAAAAATTCA    883
                          |||     ||.|||.|.||.|.||.|.|.||||||||||||||||
RBAM_002820__    833 -----AAACCGTGCCGCTTTCTCCGGTTAAAGTCAATATGAAAAAATTCA    877

BSNT_00434___    884 TCCACGTGTTTTTTTTGGAAGC-AAAGCTTTTGCATGAGACGATGAAACA    932
                     |.|||||.||.||||||||.|| ||||.|||      |..|||.|.|.||
RBAM_002820__    878 TTCACGTCTTCTTTTTGGAGGCGAAAGATTT------ACGCGAGGGATCA    921

BSNT_00434___    933 AA----------GAAGGATA-----TAA    945
                     ||          |.||| .|     |||
RBAM_002820__    922 AAATTTGTCAGCGGAGG-CAGCCGGTAA    948


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00434 and RBAM_002820

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
