Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00411 and RBAM_002730

See DNA alignment / Visit BSNT_00411 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:10
# Commandline: needle
#    -asequence pep-align/BSNT_00411___ybfN.1.9828.seq
#    -bsequence pep-align/RBAM_002730___ybfN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00411___ybfN-RBAM_002730___ybfN.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00411___ybfN-RBAM_002730___ybfN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00411___ybfN
# 2: RBAM_002730___ybfN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 96
# Identity:      46/96 (47.9%)
# Similarity:    62/96 (64.6%)
# Gaps:           6/96 ( 6.2%)
# Score: 234.5
# 
#
#=======================================

BSNT_00411___      1 ----MEKQIISWITDYQNTGDEAVLRQVREVCWPIIEAVLQEKAIDDEQA     46
                         .||.:...|..||:|||:.:|..||:.|.|::||::.|.|  ::.|
RBAM_002730__      1 MNIMEEKDLAKLIEQYQHTGDQQILEAVRDACRPVVEALISELA--EDSA     48

BSNT_00411___     47 NNLREKGIERFPFIISKYQADVQLPVETFLRNTYRFYFHQVMRESS     92
                     ..||.||.:||||||.|||....|.:||||||||||||.||::..:
RBAM_002730__     49 YLLRAKGRDRFPFIIGKYQTAAGLSLETFLRNTYRFYFQQVLKGEA     94


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.