Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00411 and RBAM_002730
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:10
# Commandline: needle
# -asequence dna-align/BSNT_00411___ybfN.1.9828.seq
# -bsequence dna-align/RBAM_002730___ybfN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00411___ybfN-RBAM_002730___ybfN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00411___ybfN-RBAM_002730___ybfN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00411___ybfN
# 2: RBAM_002730___ybfN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity: 182/328 (55.5%)
# Similarity: 182/328 (55.5%)
# Gaps: 92/328 (28.0%)
# Score: 494.0
#
#
#=======================================
BSNT_00411___ 1 ---------ATGG-AGAAA---------CAAATCATCAGCTGGATTACAG 31
|||| ||||| ||| ||||| .||.||
RBAM_002730__ 1 GTGAATATTATGGAAGAAAAGGATTTGGCAA------AGCTG--ATAGAG 42
BSNT_00411___ 32 -ATTATCAGAACACCGGAGA------------TGAAGCCGTCCTGCGGCA 68
|.||.|||.|.||.||.|| |||||||
RBAM_002730__ 43 CAGTACCAGCATACAGGGGATCAGCAAATTCTTGAAGCC----------- 81
BSNT_00411___ 69 AGTGCGAGAAGTGTGCTGGCCGATCATTGAAGCGGTTTTGCA----AGAG 114
|||||.||.|..|||.||||..||.||||.|||.| || |||.
RBAM_002730__ 82 -GTGCGGGACGCATGCCGGCCTGTCGTTGAGGCGCT----CATCTCAGAA 126
BSNT_00411___ 115 AAGGCAATAGATGATGAACA-AGCG---AACAATTTGCGCGAAAAAGGAA 160
..||| ||||.| |||| |.| .||||||.|.||||||..
RBAM_002730__ 127 CTGGC---------TGAAGACAGCGCCTATC-TTTTGCGGGCAAAAGGCC 166
BSNT_00411___ 161 TCGAGCGGTTTCCATTCATCATCAGCAAATACCA---AGCGGATGTGCAG 207
..||.||.|||||.||.||.|||.||||.||.|| .||||..| ||
RBAM_002730__ 167 GTGACCGTTTTCCGTTTATTATCGGCAAGTATCAGACCGCGGCCG-GC-- 213
BSNT_00411___ 208 CTTCCGGTTGAGACATTTTTACGAAATACGTATCGGTTTTACTTTCATCA 257
|||.||.|||||||.|||||.||.||.||||||||||||||.|||||.||
RBAM_002730__ 214 CTTTCGCTTGAGACCTTTTTGCGCAACACGTATCGGTTTTATTTTCAGCA 263
BSNT_00411___ 258 GGTGATGAGAGAATCCAGCTAA------ 279
|||..|.|.|| ||.||
RBAM_002730__ 264 GGTTTTAAAAG------GCGAAGCGTGA 285
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