Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00408 and RBAM_002710

See DNA alignment / Visit BSNT_00408 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:10
# Commandline: needle
#    -asequence pep-align/BSNT_00408___ybfM.1.9828.seq
#    -bsequence pep-align/RBAM_002710___ybfM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00408___ybfM-RBAM_002710___ybfM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00408___ybfM-RBAM_002710___ybfM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00408___ybfM
# 2: RBAM_002710___ybfM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 162
# Identity:     132/162 (81.5%)
# Similarity:   153/162 (94.4%)
# Gaps:           0/162 ( 0.0%)
# Score: 739.0
# 
#
#=======================================

BSNT_00408___      1 MELVQQLIADYGYLAIFLMLVLGIVGLPIPDEVMMTVVGYFTHTDVLNYE     50
                     ||||||||:||||:||||||.|||:|||||||||||:||||.|.:||||.
RBAM_002710__      1 MELVQQLISDYGYIAIFLMLTLGIIGLPIPDEVMMTLVGYFAHLNVLNYG     50

BSNT_00408___     51 LSILISFVGALLGMLISYMIGRKAGRPFIDKYGKWVGLKEKRMMKVEKWM    100
                     |||||||:||||||:|||.||||||||||:|:|||||||||||.||::||
RBAM_002710__     51 LSILISFIGALLGMIISYFIGRKAGRPFINKFGKWVGLKEKRMEKVDRWM    100

BSNT_00408___    101 KKYGPYSLILGYFIPGVRHVTCYFSGIGKMDLKTYVAFAAIGAFLWCFVF    150
                     ||||||::||||||||:|||||||||||:|:.|||:.|||||||||||:|
RBAM_002710__    101 KKYGPYTIILGYFIPGIRHVTCYFSGIGRMEFKTYLCFAAIGAFLWCFIF    150

BSNT_00408___    151 ITIGRVIGIIHV    162
                     ||||:.||:|:|
RBAM_002710__    151 ITIGKFIGVINV    162


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.