Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00379 and RBAM_002620

See DNA alignment / Visit BSNT_00379 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence pep-align/BSNT_00379___ybeF.1.9828.seq
#    -bsequence pep-align/RBAM_002620___ybeF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00379___ybeF-RBAM_002620___ybeF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00379___ybeF-RBAM_002620___ybeF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00379___ybeF
# 2: RBAM_002620___ybeF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 83
# Identity:      42/83 (50.6%)
# Similarity:    62/83 (74.7%)
# Gaps:           4/83 ( 4.8%)
# Score: 233.0
# 
#
#=======================================

BSNT_00379___      1 -MDELDIAFFILPLGIMLLSIVGTCICKNPYLMPMLSLVISLVLTFTIFN     49
                      :||||.||.:|||.|::||:.||.:.||.::||..:|.:.|:.|||:.|
RBAM_002620__      1 MIDELDFAFGVLPLCIIILSVAGTYLFKNAFIMPAAALAVCLICTFTVLN     50

BSNT_00379___     50 QSFLGWAVVYSLVSLALSYITLIVVRKRKESGN     82
                     .||:||||||:|||.|||:||::|:.:.|:   
RBAM_002620__     51 FSFIGWAVVYTLVSFALSHITMVVISQNKK---     80


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.