Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00379 and RBAM_002620

See Amino acid alignment / Visit BSNT_00379 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence dna-align/BSNT_00379___ybeF.1.9828.seq
#    -bsequence dna-align/RBAM_002620___ybeF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00379___ybeF-RBAM_002620___ybeF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00379___ybeF-RBAM_002620___ybeF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00379___ybeF
# 2: RBAM_002620___ybeF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 275
# Identity:     162/275 (58.9%)
# Similarity:   162/275 (58.9%)
# Gaps:          58/275 (21.1%)
# Score: 423.5
# 
#
#=======================================

BSNT_00379___      1 ---GTGGATGAATTAGATATCGCATTCTTTATTTTACCGTTAGGAATTAT     47
                        .|.||||||||.|||.|.||.|||..|.||.|.|||.|..|.||.||
RBAM_002620__      1 TTGATTGATGAATTGGATTTTGCGTTCGGTGTTCTGCCGCTTTGTATCAT     50

BSNT_00379___     48 GCTGCTATCGATTGT-------CGGGACCTGTA--TTTGTAAAAACCCGT     88
                          .|||  ||||       |||.||  |||  |.|.|||||||.|||
RBAM_002620__     51 -----CATC--TTGTCAGTCGCCGGAAC--GTACCTGTTTAAAAACGCGT     91

BSNT_00379___     89 ATC-TGATGCCAATGCTTAG----TTTGGTGATTTCTCTTGTGCTCACCT    133
                      || |.|||||  .|||  |    |||||...|||..|||.|...|||||
RBAM_002620__     92 -TCATTATGCC--GGCT--GCCGCTTTGGCCGTTTGCCTTATATGCACCT    136

BSNT_00379___    134 TTACCATTTTTAATCAATCATTTTTGGGATGGGCTGTTGTCTATA-GCTT    182
                     |||||.|.||.|||...||.|||.|.||.|||||.|||||.|||| ||||
RBAM_002620__    137 TTACCGTATTGAATTTCTCGTTTATCGGGTGGGCCGTTGTGTATACGCTT    186

BSNT_00379___    183 GGTTTCTCTGGCTTTATCCTATATCACATTGATTGTGGTAAGGAAAAGGA    232
                      ||.|||.|.||.|||||..||||.||   |||.|||||           
RBAM_002620__    187 -GTCTCTTTCGCGTTATCGCATATTAC---GATGGTGGT-----------    221

BSNT_00379___    233 AGGAATCAG-GAAATTAA-------    249
                        .||||| .|||.|||       
RBAM_002620__    222 ---GATCAGCCAAAATAAAAAATAG    243


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