Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00376 and RBAM_002600

See DNA alignment / Visit BSNT_00376 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence pep-align/BSNT_00376___glpQ.1.9828.seq
#    -bsequence pep-align/RBAM_002600___glpQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00376___glpQ-RBAM_002600___glpQ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00376___glpQ-RBAM_002600___glpQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00376___glpQ
# 2: RBAM_002600___glpQ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 295
# Identity:     242/295 (82.0%)
# Similarity:   270/295 (91.5%)
# Gaps:           2/295 ( 0.7%)
# Score: 1286.0
# 
#
#=======================================

BSNT_00376___      1 MRKNRILALFVLSLGLLSFMVTPVSAASKGNLLSPDRILTVAHRGASGYV     50
                     |||:::.||.:||.|||||:|||||||.||||||||||||:|||||||||
RBAM_002600__      1 MRKHKLFALVLLSFGLLSFIVTPVSAAGKGNLLSPDRILTIAHRGASGYV     50

BSNT_00376___     51 PEHTILSYETAQKMKADYIELDLQMTKDGKLIVMHDEKLDRTTNGMGWVK    100
                     |||||||||||||||||||||||||||||||||||||||||||||.||||
RBAM_002600__     51 PEHTILSYETAQKMKADYIELDLQMTKDGKLIVMHDEKLDRTTNGQGWVK    100

BSNT_00376___    101 DHTLADIKKLDAGSWFNEAYPEKAKPQYVGLKVPTLEEVLDRFGKHANYY    150
                     |||||:|:|||||||||:||||||||||.||:||||::||.|||:|||||
RBAM_002600__    101 DHTLAEIQKLDAGSWFNKAYPEKAKPQYAGLRVPTLDDVLKRFGRHANYY    150

BSNT_00376___    151 IETKSPDTYPGMEEKLIASLQKHKLLGKHSKPGQVIIQSFSKESLVKVHQ    200
                     ||||:|:|||||||||||||:|:||.|||:|.|||||||||::||:|:.|
RBAM_002600__    151 IETKAPETYPGMEEKLIASLKKYKLAGKHAKLGQVIIQSFSRDSLLKIKQ    200

BSNT_00376___    201 LQPNLPTVQLLEAKQMASMTDAALEEIKTYAVGAGPDYKALNQENVRMIR    250
                     |.|.||.||||||:||.|||||.|.:|||||||.||||||||.:|||.||
RBAM_002600__    201 LDPKLPAVQLLEAEQMTSMTDADLTDIKTYAVGIGPDYKALNAQNVRNIR    250

BSNT_00376___    251 SHGLLLHPYTVNNEADMHRLLDWGVTGVFTNYPDLFHKVKKGY--    293
                     ||||||||||||:||||.|||:||||||||||.|:|.||||.|  
RBAM_002600__    251 SHGLLLHPYTVNSEADMRRLLNWGVTGVFTNYADIFQKVKKEYKS    295


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