Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03829 and RBAM_002560

See DNA alignment / Visit BSNT_03829 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:09
# Commandline: needle
#    -asequence pep-align/BSNT_03829___yqeB.1.9828.seq
#    -bsequence pep-align/RBAM_002560___yqeB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03829___yqeB-RBAM_002560___yqeB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03829___yqeB-RBAM_002560___yqeB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03829___yqeB
# 2: RBAM_002560___yqeB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 240
# Identity:      97/240 (40.4%)
# Similarity:   142/240 (59.2%)
# Gaps:           8/240 ( 3.3%)
# Score: 510.5
# 
#
#=======================================

BSNT_03829___      1 MLQNQSHTLIGVTKTAVFFLYAALAIIGFAIGYFIPQIAKWALSLPWIPL     50
                     |.:.:..|::.::......::....|:|..||:|:|.|||||::|.|:|:
RBAM_002560__      1 MNEIKKQTVLELSSVEKALVFLVPPILGLVIGWFLPVIAKWAVTLDWLPV     50

BSNT_03829___     51 EGPLRLVTSFQGSTAAFITALLGMCAGIWFAHSVIAMLLSVKITDHTVEF    100
                     .|||.::.||.|..||..||::|:..|:|...:.....|...:||..|..
RBAM_002560__     51 IGPLEMIASFHGWKAAAATAVIGLIGGVWLTRAAFKETLVAVVTDSEVSL    100

BSNT_03829___    101 IKGKKVQTIHSDDIALVFMDHKRLVLLGTAGYELVREEIDEKPVNVEKAF    150
                     ....:......|.|:.||.|.|.||||||.|.||.||:::........||
RBAM_002560__    101 TIYNEESVFSKDSISGVFTDEKHLVLLGTEGQELFREKLEPAVEKAADAF    150

BSNT_03829___    151 RQHHYEWAADGDPFKDQFRRWIPDAPDLSQGAHALLKARHKALQDEEKDD    200
                     |.|.|.|....||||::::||:||.|||..||:||||||.|||::|||.|
RBAM_002560__    151 RAHGYVWLGTEDPFKEEYKRWVPDTPDLEPGANALLKAREKALKEEEKAD    200

BSNT_03829___    201 IEEFRLELAQLGIVVRDEGTRQYWRKAETYPPKIQHGEGL    240
                     .:|.:.|:::|||.||::|:|||||..:|  |..      
RBAM_002560__    201 AKELKAEISKLGITVREKGSRQYWRIYQT--PSA------    232


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