Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03829 and RBAM_002560

See Amino acid alignment / Visit BSNT_03829 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_03829___yqeB.1.9828.seq
#    -bsequence dna-align/RBAM_002560___yqeB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03829___yqeB-RBAM_002560___yqeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03829___yqeB-RBAM_002560___yqeB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03829___yqeB
# 2: RBAM_002560___yqeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity:     427/814 (52.5%)
# Similarity:   427/814 (52.5%)
# Gaps:         206/814 (25.3%)
# Score: 875.5
# 
#
#=======================================

BSNT_03829___      1 ---------ATGTTGCAGAATCAATCTCATACTCTTATTGGAGTTA----     37
                              ||       ||  ||...||.||..||.|| ||||||    
RBAM_002560__      1 ATGAACGAAAT-------AA--AAAAACAGACGGTTCTT-GAGTTATCAT     40

BSNT_03829___     38 CG-----AAAACCGCTG--TATTCTTTTTATACGCTGCACTTGCAATCAT     80
                     ||     ||||.|..||  |.||||..|     ||.||     ||||..|
RBAM_002560__     41 CGGTTGAAAAAGCTTTGGTTTTTCTGGT-----GCCGC-----CAATATT     80

BSNT_03829___     81 CGGTTTTGCAATCGGGTATTTTATCCCGCAGATTGCGAAATGGG------    124
                     .||..|.|..|||||.|..|||.|.|||...|||||||||||||      
RBAM_002560__     81 GGGGCTGGTCATCGGATGGTTTCTGCCGGTCATTGCGAAATGGGCCGTAA    130

BSNT_03829___    125 CATT--ATCCCTCCCCTGGATCCCTCTTGAAGGACCGCT--------TCG    164
                     ||||  ||        |||.|.|||.||...||.|||||        |||
RBAM_002560__    131 CATTGGAT--------TGGCTGCCTGTTATCGGGCCGCTGGAAATGATCG    172

BSNT_03829___    165 GCTCGTTACCTCTTTTCAGGGAT------CTACAGCTGCATTTATCACTG    208
                             |.||||||||.||||      ||.|.||||||      ||.|
RBAM_002560__    173 --------CTTCTTTTCACGGATGGAAGGCTGCGGCTGCA------ACCG    208

BSNT_03829___    209 CTCTTCTCGG--TATGTGTGCGGGGA-TTTGGTT----CGCTCATTCTGT    251
                     |..||.||||  ||   .|..||||| |.|||.|    ||..|| .||.|
RBAM_002560__    209 CCGTTATCGGCTTA---ATCGGGGGAGTGTGGCTGACGCGGGCA-GCTTT    254

BSNT_03829___    252 TATTGCAATGCTGCTGTCTGTCAAAATTACAGATCACACA-----GTGGA    296
                     ||..|.||..||..||.|.|||   .|.||.|     |||     |||..
RBAM_002560__    255 TAAAGAAACTCTTGTGGCAGTC---GTGACGG-----ACAGCGAGGTGTC    296

BSNT_03829___    297 ATTCATCA-----AAGGAA-AAAAAGTGCAAACAATTCATTCCGATGACA    340
                     .||.|.||     ||.||| |||..|||       ||  |||..|.||||
RBAM_002560__    297 CTTAACCATATATAATGAAGAAAGCGTG-------TT--TTCGAAAGACA    337

BSNT_03829___    341 TCGCTCT-----TGTATTTATGGATCACAAACGGCTTGTCCTCCTGGGAA    385
                       ||..|     |||.||||.||||.|.||.|..||||||.|..||||.|
RBAM_002560__    338 --GCATTTCCGGTGTGTTTACGGATGAAAAGCATCTTGTCTTATTGGGGA    385

BSNT_03829___    386 CAGCCGGATATGAATTGGTACGGGAAGAA-ATTGA---------TGAAAA    425
                     |.|..||..|.||..|..|.|||| |||| .||||         ||||||
RBAM_002560__    386 CTGAAGGGCAGGAGCTTTTTCGGG-AGAAGCTTGAGCCCGCGGTTGAAAA    434

BSNT_03829___    426 ACCAGTAAACGTTGAGAAGGCCTTTAGACAGCATCATTACGAATGGGCAG    475
                     |.|      .|.||   |.||.|||.|...||||...||.|..| |||.|
RBAM_002560__    435 AGC------GGCTG---ATGCGTTTCGCGCGCATGGGTATGTCT-GGCTG    474

BSNT_03829___    476 CAGATGG-TGATCCGTTTAAAGATCAATTTCGCCGATGGATTCCTGATGC    524
                     ..||.|| .|||||.||||||||..|||.....||.|||.|.||.||..|
RBAM_002560__    475 GGGACGGAAGATCCTTTTAAAGAAGAATACAAACGGTGGGTGCCGGACAC    524

BSNT_03829___    525 ACCAGA-------CCTATCGCAAGGCGCCCATGC-CTTATTAAAAGCTCG    566
                     .||.||       |||       ||.||..|||| ||| ||||||||..|
RBAM_002560__    525 GCCGGATTTGGAGCCT-------GGGGCAAATGCTCTT-TTAAAAGCGAG    566

BSNT_03829___    567 TCATAAAGCGCTGCAGGACGAAGAAAAAGACGATATTGAAGA----ATTC    612
                     ..|.||.||||||.|.||.||.|||||.|..|||....||||    |...
RBAM_002560__    567 AGAAAAGGCGCTGAAAGAGGAGGAAAAGGCTGATGCGAAAGAGCTGAAAG    616

BSNT_03829___    613 CGTCTCGAACTGGCACAGCTGGGCATCGTTGTACGGGACGAAGGCACACG    662
                     ||    |||.|..|..|.||||||||....||.|||||..||||..|.||
RBAM_002560__    617 CG----GAAATATCCAAACTGGGCATTACCGTGCGGGAGAAAGGATCGCG    662

BSNT_03829___    663 CCAATATTGGCGAAAAGCAGAAACCTATC---CCCCGAAAATTCAGCACG    709
                     ||||||||||||         .|.|||||   |.|||     ||.|||  
RBAM_002560__    663 CCAATATTGGCG---------GATCTATCAAACGCCG-----TCTGCA--    696

BSNT_03829___    710 GCGAAGGATTGTAA    723
                                |||
RBAM_002560__    697 -----------TAA    699


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03829 and RBAM_002560

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
