Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01387 and RBAM_002510

See DNA alignment / Visit BSNT_01387 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:05
# Commandline: needle
#    -asequence pep-align/BSNT_01387___yfiM.1.9828.seq
#    -bsequence pep-align/RBAM_002510___yfiM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01387___yfiM-RBAM_002510___yfiM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01387___yfiM-RBAM_002510___yfiM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01387___yfiM
# 2: RBAM_002510___yfiM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 416
# Identity:     106/416 (25.5%)
# Similarity:   190/416 (45.7%)
# Gaps:          41/416 ( 9.9%)
# Score: 326.5
# 
#
#=======================================

BSNT_01387___      1 MKKSIWIAWKDVKIRITDRKGFMMLILMPLILTCILGAALGSVVDGGSRI     50
                     ||....:...|.::....:..::.|||.|.::..|    ||:|..|.|::
RBAM_002510__      1 MKILFRLILLDFRLLAGAKSFYIKLILFPALMIFI----LGTVFHGDSKV     46

BSNT_01387___     51 DDIKVGYIQSD--QSDAANMFTKGVLKKMKSIKVTKAGSEDKMKKLLDEK     98
                     ...:..:..:|  :|...::....|||:...|:|...||..:.|:|:...
RBAM_002510__     47 KPFQTAFYNADHAESSLGDVLKNDVLKQTDLIRVKDIGSYQEGKQLVKSG     96

BSNT_01387___     99 KIDVGIVIP-------NHWEAGKTSAVVYATPDQTLKSSIIETAASSFIE    141
                     |:.|.:.:|       .|.|  |||..|.:....::...|:|..|.||:.
RBAM_002510__     97 KVSVFVYVPKGFAKAAEHNE--KTSIKVISDQQGSVNGDIVEMMADSFVT    144

BSNT_01387___    142 QYKAVKEAASASMDYISKTEAV--KQGKLDPAQFAEKLAKALEKETGDKL    189
                     :.||          .||:.:||  :.|.|.... |.|:...|..|....:
RBAM_002510__    145 RVKA----------EISEEKAVLKQSGHLSKGD-ASKIISGLSGEREQAV    183

BSNT_01387___    190 TIAEKSVGSKA--VTSFQYYSAAMLCMFMLFHMTVGAKSFLQEKDTETLA    237
                     ||.::|.|:.|  :.:.||||.||:.||.:..........::|:...||.
RBAM_002510__    184 TIPKQSAGNHAAPIDAMQYYSIAMVVMFSIMTAFALIHGIVEERQQHTLF    233

BSNT_01387___    238 RMLMPPAQKSVILFGKWLGTYLFAIIQFFIFLIVTINVFGVDWGGNLLFV    287
                     |:...|..:...:.||.||..|..::|....:|.:..::.|.| |||..:
RBAM_002510__    234 RIKSMPVLRIQYVAGKLLGIMLAILMQMAAVIIASSILYQVKW-GNLFEI    282

BSNT_01387___    288 SVLGLSYAAAVSGISMLLASFLSDMKSADAIGGFGIQLL---AVLGGSML    334
                     .::.:.|:.|:..| :||..|.:  |:.:.:......:|   :.||||.:
RBAM_002510__    283 LLVTIVYSFAIGSI-VLLWGFTA--KNHETVSSMAAPILYGFSFLGGSFI    329

BSNT_01387___    335 PLYQFPDVLQSISKAVPNRWALDGFLSLMEGGGWADLQKPVLLFAAIGFC    384
                     .....||.|:.:.:.:||..|::.::|:.:..|.:.:...:...||||..
RBAM_002510__    330 AKDGLPDSLKIVQELIPNGKAINSYVSVTQHAGLSGISTDLAELAAIGAV    379

BSNT_01387___    385 SLAIGIRRLHTR----    396
                     .|.:.|.....:    
RBAM_002510__    380 FLCLTIWVFKRKEAVS    395


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