Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01387 and RBAM_002510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:05
# Commandline: needle
# -asequence dna-align/BSNT_01387___yfiM.1.9828.seq
# -bsequence dna-align/RBAM_002510___yfiM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01387___yfiM-RBAM_002510___yfiM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01387___yfiM-RBAM_002510___yfiM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01387___yfiM
# 2: RBAM_002510___yfiM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1465
# Identity: 685/1465 (46.8%)
# Similarity: 685/1465 (46.8%)
# Gaps: 551/1465 (37.6%)
# Score: 1190.0
#
#
#=======================================
BSNT_01387___ 1 ATGAAAAAAAGCATAT------GGATCGCATGGAAAGATGTCAAAATCAG 44
|||||||.| .||| .||||..|| .||||.| ||.|
RBAM_002510__ 1 ATGAAAATA---TTATTCAGGCTGATCTTAT---TAGATTT-----TCGG 39
BSNT_01387___ 45 AATCA-----CGGACAGAAAAGGGTT----TATGATGCTTATCCTAATGC 85
|.| ||| ||.||||..|| |||.|..||.||.||..|.|
RBAM_002510__ 40 --TTATTGGCCGG--AGCAAAGTCTTTCTATATAAAACTGATTCTGTTTC 85
BSNT_01387___ 86 CG---CTGATCCTAACCTGTATTTTAGGCGCGGCGCTCGGATCAGTTGTT 132
|| |||| |.|..|.||||||| |||.|.|||.||
RBAM_002510__ 86 CGGCACTGA---TGATTTTTATTTTA------------GGAACGGTTTTT 120
BSNT_01387___ 133 GACGGAGGCAGCCGGATTGATGACATCAAAGTCGGCTACATTCAATCAGA 182
.|||| .|||| .||.|..|||| .|||| |||||
RBAM_002510__ 121 CACGG--------CGATT--CGAAAGTAAAG------CCATT---TCAGA 151
BSNT_01387___ 183 CC----------AGTCAGATGCA-GCGAACATGTT------------TAC 209
|| |..|.||| || |||.|.| ||| ||.
RBAM_002510__ 152 CCGCGTTTTATAATGCGGAT-CACGCGGAGA-GTTCTTTGGGCGACGTAT 199
BSNT_01387___ 210 AAAAG------GTGTTCTCAAA-AAAATGAAGTCGAT-------AAAGGT 245
.|||| ||| ||.||| |||.|||..|| || ||||
RBAM_002510__ 200 TAAAGAATGACGTG--CTGAAACAAACTGATCTC-ATCCGTGTAAAAG-- 244
BSNT_01387___ 246 CACAAAAGCCGGCAGCGAGGACAAGATGAAAAAACTGCTTGATGAAAAG- 294
|||.| |||||..| .|||||.| ..||||.||||| |.|||||
RBAM_002510__ 245 -ACATA----GGCAGTTA--CCAAGAAG-GGAAACAGCTTG-TCAAAAGC 285
BSNT_01387___ 295 ---AAA------ATTGATGTAGGTATCGTCATCCCGAA--CCATTGGGAA 333
||| .||..|||| || |.|.||||| .|.|||..||
RBAM_002510__ 286 GGCAAAGTCTCCGTTTTTGTA--TA----CGTGCCGAAAGGCTTTGCAAA 329
BSNT_01387___ 334 GCCGGCAAAACCTCAGCTGTTGTTTATGCCACTCCTGATCAAACATTGAA 383
..|||||.||| |||.||||
RBAM_002510__ 330 AGCGGCAGAAC-------------------------------ACAATGAA 348
BSNT_01387___ 384 -----AAGTTCCA---TCATC---GA--AACAGCTGCAAGCTCTTTTA-- 418
||||..|| ||||| || |||| |.|||||.|.|
RBAM_002510__ 349 AAAACAAGTATCAAAGTCATCTCGGACCAACA-----AGGCTCTGTAAAC 393
BSNT_01387___ 419 -TAGAGCAATATAAAGCGGTAAAGGA-AGCCG---CGT-------CAGCC 456
.||| ||.|.| |.|||.|| .|||| ||| |||
RBAM_002510__ 394 GGAGA-CATTGT------GGAAATGATGGCCGATTCGTTTGTCACCAG-- 434
BSNT_01387___ 457 TCAATGGACTACATCAGTAAAACAGAAG--CTGTAAAGCAAGGAAAAC-T 503
|||||||..|.|| |.||.||| .||||.| .
RBAM_002510__ 435 ---------------AGTAAAAGCGGAGATCAGTGAAG---AGAAAGCGG 466
BSNT_01387___ 504 TGACCCTGCA-CAGTTTGCAGAAAAGCTGGCAAAGG----CGCTTGAAAA 548
|| |||.| |||| |.|.|.|.|||.|||||| .||..|.|||
RBAM_002510__ 467 TG---CTGAAGCAGT---CGGGACATCTGTCAAAGGGAGATGCCAGCAAA 510
BSNT_01387___ 549 AGAAACAG-----------------GTG-ACAAGCTG--ACTATTGCAGA 578
|..|.||| ||| |||.|||| ||.||| |.||
RBAM_002510__ 511 ATCATCAGCGGCCTTTCGGGTGAACGTGAACAGGCTGTCACCATT-CCGA 559
BSNT_01387___ 579 AAAATCTGTCGG-CAGCAA------GGCCGTTACCAGTT-------TTCA 614
|| |.||||| |.|||| |||| ||..|| |.||
RBAM_002510__ 560 AA---CAGTCGGCCGGCAATCACGCGGCC----CCGATTGATGCGATGCA 602
BSNT_01387___ 615 ATACTATTCGGCGGCAATGCTTTGCATGTTTATGCTGTTTCA-TATGACA 663
.||.|||||....||||||.|...|||||| .|.|| ||||||.
RBAM_002510__ 603 GTATTATTCAATCGCAATGGTCGTCATGTT-------CTCCATTATGACC 645
BSNT_01387___ 664 GTCGGGGCGAAATCGTT--------TTTACAGGA------AAAGGATAC- 698
| |||| ||.||.||| ||..||.||
RBAM_002510__ 646 G------------CGTTTGCGCTCATTCACGGGATAGTGGAAGAGAGACA 683
BSNT_01387___ 699 ---GGAGACGCTTGCCAGAATGCTGATGCCGCCTGCGCAAA--AATCCGT 743
|.|.|||.|...|||||| |||| |||.|.|
RBAM_002510__ 684 GCAGCACACGTTATTCAGAAT----------------CAAATCAATGCCT 717
BSNT_01387___ 744 CATT---CTCTTCGGAAAATGGC----------TTGGGACGTATC-TGTT 779
..|| .|.|.|.|.|..|||| |||||| ||| ||.|
RBAM_002510__ 718 GTTTTACGTATCCAGTACGTGGCGGGTAAGCTTTTGGGA---ATCATGCT 764
BSNT_01387___ 780 TGCCATCATACAATTTTTCATATTTCTG-----ATCGTCACAATCAATGT 824
||||||| .||.|.||.||..||| |||.||.|||.|| |.
RBAM_002510__ 765 TGCCATC-----CTTATGCAAATGGCTGCCGTCATCATCGCAAGCA--GC 807
BSNT_01387___ 825 ATTTGGT-----GTGGACTGGGGCGGTAATCTGCTGTTTGTGAGTGTACT 869
||.|.|| ||..|.|||||| ||| .||||||..|...||||
RBAM_002510__ 808 ATCTTGTATCAGGTAAAATGGGGC---AAT---TTGTTTGAAATATTACT 851
BSNT_01387___ 870 CGGGCTTTCTTACG---------------CCG--CCGCTGTATCTGGCAT 902
.| ||||| .|| |.||.|||||
RBAM_002510__ 852 GG-------TTACGATTGTTTATTCATTTGCGATCGGCAGTATC------ 888
BSNT_01387___ 903 TTCAATGCTGC-TTGCGTCTTTCCTCAGCGATATGAAATCTGCG-GATGC 950
.||||.| |||.|..|||.|| ||.| |||.|..|| || |
RBAM_002510__ 889 ----GTGCTTCTTTGGGGGTTTACT--GCAA----AAAACCACGAGA--C 926
BSNT_01387___ 951 GATC--------GGCGGC----------TTCGGCATTCAATTGCTTGCGG 982
..|| |||||| |.||| |||||.||
RBAM_002510__ 927 CGTCTCAAGCATGGCGGCTCCCATTTTATACGG-ATTCAGTT-------- 967
BSNT_01387___ 983 TTCTCGGCGGATCCATGCTGCCGCTGTATC----AATTTCCGGACGTCTT 1028
||.|.|||||| .|||.|||| || ||||.|||
RBAM_002510__ 968 TTTTAGGCGGA----------AGCTTTATCGCAAAA------GACGGCTT 1001
BSNT_01387___ 1029 G-----CAGTCT-----ATATCCA--AAGCGGTGCCAAATCGCTGGGCGC 1066
| ||||.| .|.|||| ||..|.|.||.||..||...|||.
RBAM_002510__ 1002 GCCTGACAGTTTGAAAATTGTCCAGGAACTGATACCGAACGGCAAAGCGA 1051
BSNT_01387___ 1067 TTGACGGCTTTCTTTCTTTAATGGAAGGG-------GGAGGCTGGGCTGA 1109
|..||.||| |||..||.| |.|.||.||.||||
RBAM_002510__ 1052 TCAACAGCT-----------ATGTCAGTGTCACGCAGCATGCCGGTCTGA 1090
BSNT_01387___ 1110 CCTTCAAAAGCCTGTGCTTC------TTT--------TTGCGGCGATCGG 1145
.|.||..||| ||| ||||.||.|||||
RBAM_002510__ 1091 ----------GCGGTATTTCGACGGATTTGGCAGAGCTTGCCGCCATCGG 1130
BSNT_01387___ 1146 C---------TTTTGTT----CACTTG------CAATTGGTATCAGACGG 1176
| ||.|||| ||..|| .||..||.|..||.|.|
RBAM_002510__ 1131 CGCCGTGTTTTTATGTTTGACCATCTGGGTGTTTAAACGGAAGGAGGCTG 1180
BSNT_01387___ 1177 CTTCATACAAGATAA 1191
.||||| ||
RBAM_002510__ 1181 TTTCAT----GA--- 1188
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