Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01385 and RBAM_002500

See DNA alignment / Visit BSNT_01385 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:05
# Commandline: needle
#    -asequence pep-align/BSNT_01385___yfiL.1.9828.seq
#    -bsequence pep-align/RBAM_002500___yfiL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01385___yfiL-RBAM_002500___yfiL.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01385___yfiL-RBAM_002500___yfiL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01385___yfiL
# 2: RBAM_002500___yfiL
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 314
# Identity:     154/314 (49.0%)
# Similarity:   213/314 (67.8%)
# Gaps:           6/314 ( 1.9%)
# Score: 736.5
# 
#
#=======================================

BSNT_01385___      1 MLQAENIKKAYGKKTIVKGISFSLQKGESFGLLGPNGAGKSTTISMISGL     50
                     ||:..::.|.||..|.|..||..::|||.||||||||||||||:||||.:
RBAM_002500__      1 MLELTDLTKKYGDFTAVNHISLRVEKGEIFGLLGPNGAGKSTTVSMISTV     50

BSNT_01385___     51 VPHDSGNITVGGYVIGKETAKAKQKIGIVPQEIALYPTLTAHENLMFWGK    100
                     :|...|.|.:.|..:.::.|..|:.:|:||||||||..|:|.:||.|:|.
RBAM_002500__     51 LPPTGGTICIDGTSLQEQPAAIKKVMGVVPQEIALYQALSAKDNLAFFGG    100

BSNT_01385___    101 MYGLTHGEAKKRSAEVLEYVGLTERAKDKIETFSGGMKRRINIGAALMHK    150
                     :|||:..|..||..|||:.:.|.|:...::..||||||||:|||||||::
RBAM_002500__    101 LYGLSGKELCKRVDEVLDIIELQEQRHQRVSEFSGGMKRRVNIGAALMNE    150

BSNT_01385___    151 PELLIMDEPTVGIDPQSRNHILETVKKLN-ETGMTVIYTSHYMEEVEFLC    199
                     |:|.|:||||||||||||:|||||||.|| |.|||||||||||||||:||
RBAM_002500__    151 PKLFILDEPTVGIDPQSRHHILETVKTLNQEKGMTVIYTSHYMEEVEYLC    200

BSNT_01385___    200 DRIGIIDQGEMIAIGTKTDL-CSRLGGDTIIQLTVSGIDEAFLLAIRSLA    248
                     ::..|:|.|.:||.|||.:| .|....||:| :...|::...:..||.::
RBAM_002500__    201 EKAAIMDHGSIIACGTKDELKQSAKASDTLI-VNAEGLNHDAVKKIRRIS    249

BSNT_01385___    249 HVNDVTVQESELKIDISAAHHEKVVTSLLAEAAAHHINLLSLQVQEPNLE    298
                     .|.:..|.:..:.:.:|||  ::.:..:..:.....|.:..:..:|.|||
RBAM_002500__    250 GVAEAAVSQQTITMLVSAA--DRNILDIADDIRKTGITIKGIHFEEANLE    297

BSNT_01385___    299 RLFLNLTGRTLRD-    311
                     .:||.|||:|||| 
RBAM_002500__    298 SIFLRLTGKTLRDS    311


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