Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01385 and RBAM_002500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:05
# Commandline: needle
# -asequence dna-align/BSNT_01385___yfiL.1.9828.seq
# -bsequence dna-align/RBAM_002500___yfiL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01385___yfiL-RBAM_002500___yfiL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01385___yfiL-RBAM_002500___yfiL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01385___yfiL
# 2: RBAM_002500___yfiL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1086
# Identity: 606/1086 (55.8%)
# Similarity: 606/1086 (55.8%)
# Gaps: 300/1086 (27.6%)
# Score: 1470.0
#
#
#=======================================
BSNT_01385___ 1 GTGCTGCAAGCAGAAAACATCAAA--AAGGCATATGGAAAAAAAA----- 43
|.|| ||.|| ||.|.|| |.||.|||.||
RBAM_002500__ 1 -------ATGC--------TCGAATTAACGGAT-TTGACAAAGAAGTACG 34
BSNT_01385___ 44 ----------------CAATCGTGAAAGGTATTTCTTTTTCCCTCCAAAA 77
||||| .|||.||..|...|.||.||||
RBAM_002500__ 35 GCGATTTTACCGCTGTCAATC-------ATATATCACTGCGCGTCGAAAA 77
BSNT_01385___ 78 GGGGGAGTCGTTCGGTCTGCTCGGGCCAAACGGTGCCGGGAAGTCCACAA 127
.||.|||...|||||||||||.||.||||||||.|||||.||.||.||||
RBAM_002500__ 78 AGGCGAGATATTCGGTCTGCTGGGACCAAACGGCGCCGGTAAATCAACAA 127
BSNT_01385___ 128 CCATCTCGATGATTTCCGGCCTTGTG---CCGCATGACAGCG---GGAAC 171
|..|.|||||||| |.||...||| |||| ||.|| |||||
RBAM_002500__ 128 CGGTGTCGATGAT---CAGCACCGTGCTCCCGC----CAACGGGCGGAAC 170
BSNT_01385___ 172 ATCACGGTGGGCGGCTATGT-CAT---CGGA--------AAAGAAACGGC 209
| ||.| ||| |||| |.||.|.|.||
RBAM_002500__ 171 A---------------ATCTGCATTGACGGAACCTCATTACAGGAGCAGC 205
BSNT_01385___ 210 CAAAGCG---AAACAAAAA---ATCGGCATTGTTCCGCAGGAAATTGCAT 253
| .||| |.|.||||| ||.||..|.||.|||||||||||.||.|
RBAM_002500__ 206 C--TGCGGCCATAAAAAAAGTGATGGGAGTCGTCCCGCAGGAAATCGCTT 253
BSNT_01385___ 254 TATATC---CGACACTGACG-GCTCATGAGAAT----CTTATGTTTT-GG 294
|||||| || |.|.| ||..|.||.||| ||| |||| ||
RBAM_002500__ 254 TATATCAAGCG----TTAAGCGCAAAGGATAATTTGGCTT---TTTTCGG 296
BSNT_01385___ 295 GGGAAAATGTACGGACTTACGCACGGTGAGGCCAAAA------AAA---- 334
||| ..|||||||||||.| ||||.||| || |||
RBAM_002500__ 297 GGG--TCTGTACGGACTTTC---CGGTAAGG----AACTTTGTAAACGGG 337
BSNT_01385___ 335 --GATCGGCAGAGGTCCTTGA-AT-ATGTCGGTCTGACTG----AGCGGG 376
||| ||.||.||.|| || || .|..|.||.| ||||
RBAM_002500__ 338 TTGAT-----GAAGTGCTGGACATCAT---CGAATTACAGGAACAGCG-- 377
BSNT_01385___ 377 CTAAAGAT--AAG---AT-TGAAACGTTCTCCGGGGGGATGAAACGAAGA 420
|.|| ||| || ||| |||.||.||.||.||||||.||.|.
RBAM_002500__ 378 ----ACATCAAAGGGTATCTGA---GTTTTCAGGCGGCATGAAAAGACGG 420
BSNT_01385___ 421 ATCAACATCGGTGCGGCTTTAATGCATAAGCCCGAGCTGCTGATTATGGA 470
.|.||.|||||.||.||..|||||.||.|.||..|.||..|.|||.|.||
RBAM_002500__ 421 GTGAATATCGGGGCCGCGCTAATGAATGAACCTAAACTATTCATTTTAGA 470
BSNT_01385___ 471 TGAACCGACTGTCGGTATTGACCCTCAATCGAGAAATCACATTTTAGAAA 520
|||||||||.|||||.|||||.||.|||||.|||.|.||.|||.|.||||
RBAM_002500__ 471 TGAACCGACCGTCGGAATTGATCCGCAATCCAGACACCATATTCTTGAAA 520
BSNT_01385___ 521 CGGTCAA------AAAGCTCAACGAAACGGGCATGACGGTGATCTATACG 564
|.||.|| ||| |||| ||||..||.|||||.||.|||||||||
RBAM_002500__ 521 CCGTGAAGACGTTAAA--TCAA-GAAAAAGGGATGACCGTCATCTATACG 567
BSNT_01385___ 565 AGTCATTACATGGAAGAGGTTGAGTTTTTATGCGACAGGATCGG-GATAA 613
||||||||||||||||||||.||.|...|.||.|| |..|.||| |||.|
RBAM_002500__ 568 AGTCATTACATGGAAGAGGTCGAATACCTCTGTGA-AAAAGCGGCGATCA 616
BSNT_01385___ 614 TTGATCAGGGGGAAATGATTGCGATTGGCAC-AAAAACTGATTT------ 656
|.|||||.||...|||.|||||....||.|| |||.|| ||.||
RBAM_002500__ 617 TGGATCACGGCTCAATCATTGCCTGCGGGACGAAAGAC-GAATTGAAGCA 665
BSNT_01385___ 657 GTGCAGCC---GCCTTGGGGGC-GATACC---ATC----ATTCAGCTCAC 695
|| ||||| |||| | |||||| ||| ||.||| |.
RBAM_002500__ 666 GT-CAGCCAAAGCCT------CTGATACCCTGATCGTGAATGCAG---AG 705
BSNT_01385___ 696 GGTCAGCGGAATCGATGAAGCGTTTCTTTTGGCG--------ATCCG--- 734
|| ||.||||| ||||.|| || |||||
RBAM_002500__ 706 GG---GCTGAATC-ATGACGC-----------CGTTAAAAAAATCCGCCG 740
BSNT_01385___ 735 ---TTCCCTGGCTCATGT------GAATGATGTAACAGTCCAGGAGTCAG 775
|||| || ||| |..||.||| ||| |||| |||
RBAM_002500__ 741 CATTTCC--GG----TGTTGCCGAGGCTGCTGT--CAG-CCAG----CAG 777
BSNT_01385___ 776 AACTCAAAATT--GA----CATTTCTGCGGCTCATCATGAGAAAGTCGTC 819
|.| ||| || |.|.||||||||..||| |.||
RBAM_002500__ 778 ACC-----ATTACGATGCTCGTCTCTGCGGCAGATC----GCAA------ 812
BSNT_01385___ 820 ACGAGTCTGCTTGCTGAAGCCGCTGCTCATCATAT-----AAACCTGCTG 864
|.|.||||.| ..|||..||.|||| ||||| |.|.
RBAM_002500__ 813 -----TATCCTTGAT------ATTGCGGATGATATTAGGAAAACC-GGTA 850
BSNT_01385___ 865 TCTC-----------TTCAGGTGCAGGAACCGAATCTGGAGCGCCTGTTT 903
||.| ||||..|..|||||.|.||||||||..||.|.||.
RBAM_002500__ 851 TCACCATTAAAGGCATTCATTTCGAGGAAGCCAATCTGGAAAGCATTTTC 900
BSNT_01385___ 904 CTGAATCTGACAGGCCGCACGTTGCGGGAT---TAG 936
||....||.||.|||...|||.|||||||| |||
RBAM_002500__ 901 CTCCGGCTTACCGGCAAAACGCTGCGGGATTCATAG 936
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