Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_01381 and RBAM_002490
See
DNA alignment /
Visit
BSNT_01381 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:05
# Commandline: needle
# -asequence pep-align/BSNT_01381___yfiK.1.9828.seq
# -bsequence pep-align/RBAM_002490.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_01381___yfiK-RBAM_002490.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01381___yfiK-RBAM_002490.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01381___yfiK
# 2: RBAM_002490
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 230
# Identity: 87/230 (37.8%)
# Similarity: 132/230 (57.4%)
# Gaps: 26/230 (11.3%)
# Score: 415.0
#
#
#=======================================
BSNT_01381___ 1 MIKIIITDDQDIVREGLASLLQLREELDVIATARNGQEAFEKAKELEPDI 50
:.:::.|||.||||||..:|.|.|.:.:...|..|:|......:.|.|:
RBAM_002490 1 -MNVMVADDQSIVREGLKMILSLHEGIQISGEASCGEEVLRLLSQTETDV 49
BSNT_01381___ 51 VLMDIRMPVSNGVEGTKLITSSLPGVKVLMLTTFKDSELIAEALEEGASG 100
:|||||||..:|:|.||.:.:..|.|||::||||:|...|...|:.||.|
RBAM_002490 50 ILMDIRMPGMDGIETTKAVKARYPSVKVIILTTFEDDHYIFAGLKSGADG 99
BSNT_01381___ 101 YLLKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGINEIE 150
|||||..:|.::.::..|:.|.|:|.|::|..: :|.:|.:|
RBAM_002490 100 YLLKDADSDEMIASLQAVYEGKMMLNPKITVSV---------VKALNNME 140
BSNT_01381___ 151 KP----------KELLDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVK 190
.| ||: ||.||::|...:..|.:||.||..|::||||||
RBAM_002490 141 IPAVQKEPRTKLKEI--LTPRELDVAKHIMEGKSNKRIAADLFLTEGTVK 188
BSNT_01381___ 191 NHVSNIISKLAVRDRTQAAIYSVRYGVSVF 220
|:||.|:.||.|.:||:..:|..:..
RBAM_002490 189 NYVSRILDKLEVSNRTELTLYLQKLL---- 214
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.