Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01381 and RBAM_002490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:05
# Commandline: needle
# -asequence dna-align/BSNT_01381___yfiK.1.9828.seq
# -bsequence dna-align/RBAM_002490.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01381___yfiK-RBAM_002490.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01381___yfiK-RBAM_002490.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01381___yfiK
# 2: RBAM_002490
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 793
# Identity: 395/793 (49.8%)
# Similarity: 395/793 (49.8%)
# Gaps: 278/793 (35.1%)
# Score: 823.5
#
#
#=======================================
BSNT_01381___ 1 ----ATGATTAAGATCATCATTACCGACGATCAGGATATCGTCAGAGAAG 46
||| ||||..||.|.|||||.|||...||.||.|||||.|
RBAM_002490 1 GTGAATG-------TCATGGTTGCAGACGACCAGTCCATTGTGAGAGAGG 43
BSNT_01381___ 47 GGCTG-----GCATCCCTG---CTCCAGCTCCGAGAAGAGCTC-GATGTG 87
||||| |..| ||| ||.|| ||| |.||..|| .||
RBAM_002490 44 GGCTGAAAATGATT--CTGAGTCTTCA----CGA-AGGAATTCAAAT--- 83
BSNT_01381___ 88 ATC-GCAACGGC--------GCGAAACGG---ACAGGAAGCCTTCGAAAA 125
||| |.|..||| |||||..|| .|.||..||.|||..|||
RBAM_002490 84 ATCGGGAGAGGCTTCTTGCGGCGAAGAGGTTCTCCGGCTGCTTTCTCAAA 133
BSNT_01381___ 126 GGCGAAAGAGCTGGAGCCGGATATCGTGTTAATGGACATCCGCATGCCGG 175
.||||| |.|||.|..|.||.|||||.|||.|.|||||
RBAM_002490 134 -CCGAAA----------CCGATGTGATTTTGATGGATATCAGAATGCC-- 170
BSNT_01381___ 176 TTTCCAACGGGGTGGAGGGA---------ACAAAA----TTAATCACAAG 212
|||..||||.||| |||||| ||| |||
RBAM_002490 171 -------CGGTATGGACGGAATCGAAACGACAAAAGCGGTTA-----AAG 208
BSNT_01381___ 213 CTCGCTGCCCG-GCGTAAAGGTTTTGATGCTGACAACCTTTAAGGAT--T 259
|.||.|..||| .||||||.||..|.||.||||||||.|||.||||| |
RBAM_002490 209 CGCGATATCCGTCCGTAAAAGTCATCATTCTGACAACGTTTGAGGATGAT 258
BSNT_01381___ 260 CAGAGCT-GATT--------GCTGAAGCGCTTGAAGAAGGAGCAAGCGGG 300
|| || .||| ||||||..|| |||||...|||.
RBAM_002490 259 CA---CTATATTTTTGCCGGGCTGAAAAGC--------GGAGCCGACGGC 297
BSNT_01381___ 301 TACCTGCTGAAGGATATGTCGGCAGATAC-GATTGTAAAAGCGGTGAT-G 348
||.||..|||||||| ||.|||.| || |.||| |||| |
RBAM_002490 298 TATCTCTTGAAGGAT------GCTGATTCAGA---TGAAA----TGATCG 334
BSNT_01381___ 349 ACTGTTCATTCTGGC-----------GGA--ATGGTGCTTCCGCCGGAAT 385
.| |.|.|||..|| ||| |||.|||| ||||
RBAM_002490 335 CC--TCCCTTCAAGCCGTTTACGAAGGGAAGATGATGCT-------GAAT 375
BSNT_01381___ 386 TGACTGCCCAAATGCTGAATGAATGGAAGCGT-GAAAAACAGCTGAAAGG 434
||||| |||.|..|....||| |.||||..|||||| .
RBAM_002490 376 ------CCCAA------AATCACGGTTTCCGTCGTAAAAGCGCTGAA--C 411
BSNT_01381___ 435 AATAAAT-GAGAT-----------AGAA------------AAACCT-AAG 459
||| || ||||| |||| |||.|| |||
RBAM_002490 412 AAT--ATGGAGATCCCTGCGGTGCAGAAAGAGCCGCGGACAAAGCTGAAG 459
BSNT_01381___ 460 GAGCTGCTCGAC-CTGACAGAGC--------GCGAA-------ATCGAAG 493
|||.|.||| || |.||.||||| ||||| ||.|||
RBAM_002490 460 GAGATTCTC-ACGCCGAGAGAGCTTGATGTGGCGAAACACATTATGGAA- 507
BSNT_01381___ 494 TTCTGGCTGAGCTTGGGTACGGGCTGAATAACAAAGAA---ATTGCCGAA 540
||| ||.|.|||..|| |||||||.|
RBAM_002490 508 ---------------------GGC--AAAAGCAATAAACGCATTGCCGCA 534
BSNT_01381___ 541 AAGCTTTACATT----ACAGAAGGCACAGTCAAAAACCACGTTTCAAATA 586
.| ||| ||| ||.||||||||.||.||||||.|.||.||.|..|
RBAM_002490 535 GA-CTT---ATTTCTGACTGAAGGCACTGTGAAAAACTATGTATCCAGAA 580
BSNT_01381___ 587 TTATCAGCAAGCTGG--CTGTCAGGGACAGAACCCAAGCCGCCATTTACT 634
|..||...||.||.| .||||| .|||||||..| || ||||
RBAM_002490 581 TCCTCGATAAACTAGAAGTGTCA--AACAGAACTGA----GC---TTAC- 620
BSNT_01381___ 635 CGGTCAGATATGGTGTATCTGTCTTTTGA-------------- 663
|..||| ||||.
RBAM_002490 621 ----CTTATA--------------TTTGCAAAAATTGCTATAA 645
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