Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01380 and RBAM_002480

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:05
# Commandline: needle
#    -asequence pep-align/BSNT_01380___yfiJ.1.9828.seq
#    -bsequence pep-align/RBAM_002480.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01380___yfiJ-RBAM_002480.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01380___yfiJ-RBAM_002480.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01380___yfiJ
# 2: RBAM_002480
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 414
# Identity:      97/414 (23.4%)
# Similarity:   171/414 (41.3%)
# Gaps:          69/414 (16.7%)
# Score: 215.5
# 
#
#=======================================

BSNT_01380___      1 -----------------MYLSIVKEDNWFG--YVFIAAGAAMYAAN---H     28
                                      ::.:|::.....|  .||::....|..||   .
RBAM_002480        1 MKIAHTKLLIRGFALLSIFHAILQLPPGRGELKVFLSVLVMMLTANDCLR     50

BSNT_01380___     29 VLLTKETNAIW---FCLIDIAIGFSFGFIFP-GT-GLFIIMLCPVAVAFF     73
                     .|..|...|::   |.|.::..|.....::. || .:.:::|..|.:.  
RBAM_002480       51 PLYMKRRPAVYQVSFLLSNVIAGVLLYNVYSVGTQAVMVLLLAEVLIT--     98

BSNT_01380___     74 LRGFPKRTAWSVLCLCSILFLIVLIRTYAMFGNEFVIDHLTSMTFVVFCG    123
                         .|:.:..:|.:.:..|...|   ||  |...|.| :....|::|..
RBAM_002480       99 ----DKQISAVLLTMNAAAFAAAL---YA--GGAGVSD-IVPPYFIMFAV    138

BSNT_01380___    124 VVGKLIRKLLDAQDTAKQQFQELTESHLALSAAHQELHLYAKQVEELTAI    173
                     :.  |.|:.|  |:.:|   .||....|.:  |:..|..|:.::|||...
RBAM_002480      139 IY--LYRRNL--QEKSK---VELLNRELKI--ANDTLKEYSDRIEELAVT    179

BSNT_01380___    174 YERNRMAREIHDTVGHKMTALLVQLQLLREWQKRDSKKADETVGVCETLA    223
                     .||.|:|:|:||::||.:.||.:.|:...:.......|..:.:.....|.
RBAM_002480      180 KERTRIAQELHDSLGHYLAALKMNLEFAGKTAGHQPDKVKQIIHKAHDLT    229

BSNT_01380___    224 REALDDVRLSVRTLQ-TENDPSLIESLKQLTEDFCKNAGVTTEFAVNGDP    272
                     :|::..:|.:|..|| :.......:.|:.:...|.:..|:  .|.:..|.
RBAM_002480      230 KESILKLRQAVMLLQGSLPGRGFEQELRDIFSHFQEAGGI--RFELEMDA    277

BSNT_01380___    273 AI---IPLSLHPTLIRTVQEALTNAKRHGGAAACSIQLACTTDSISLVIK    319
                     ||   .|...| .|.::|||.:|||.:||.|:..|:::....:.|...|.
RBAM_002480      278 AIEAEQPDVKH-CLYQSVQETITNAIKHGHASYVSVRIQKNRNMILAHIH    326

BSNT_01380___    320 DDGKGNPEAALGFGLLNMKKRAAEHGGTIRFESERDQGFTVNAEFSLANK    369
                     ::|..........||..::||||..||...|.|.::.||.|........:
RBAM_002480      327 NNGSACGTIIKSNGLKGIEKRAAALGGEAVFSSGKETGFDVKIRIPCKEE    376

BSNT_01380___    370 KWSFGPVQQKESLS    383
                                   
RBAM_002480      376 --------------    376


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