Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01380 and RBAM_002480

See Amino acid alignment / Visit BSNT_01380 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:05
# Commandline: needle
#    -asequence dna-align/BSNT_01380___yfiJ.1.9828.seq
#    -bsequence dna-align/RBAM_002480.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01380___yfiJ-RBAM_002480.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01380___yfiJ-RBAM_002480.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01380___yfiJ
# 2: RBAM_002480
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1499
# Identity:     610/1499 (40.7%)
# Similarity:   610/1499 (40.7%)
# Gaps:         715/1499 (47.7%)
# Score: 1055.0
# 
#
#=======================================

BSNT_01380___      1 ATGTATCTGTCCATTGTGAAAGAGGATAACTGGTTTGGATATGTATTTAT     50
                                                                       
RBAM_002480        0 --------------------------------------------------      0

BSNT_01380___     51 AGCAGCAGGTGCTGCCATGTATGCAGCCAATCATGTTTTGCTGACAAAAG    100
                                         |||.||          .||||  |||.|.|
RBAM_002480        1 --------------------ATGAAG----------ATTGC--ACATACG     18

BSNT_01380___    101 AGACAAATGCCATC--TGGTTCTGCCTGATTGATATTGCAATCGGCTTTT    148
                     |....|.||  |||  .||||.|||   |||..|||  |||||    |||
RBAM_002480       19 AAGTTACTG--ATCAGGGGTTTTGC---ATTACTAT--CAATC----TTT     57

BSNT_01380___    149 CGTTCGGA---TTTATCTT--TCCCGGCAC------------AGGTT---    178
                     |.|.| ||   ||.|.|||  ||||||| |            |||||   
RBAM_002480       58 CATGC-GATTCTTCAGCTTCCTCCCGGC-CGGGGGGAGCTGAAGGTTTTT    105

BSNT_01380___    179 -------TGTTCATTATTATGCT--------TTGTCCGGTTGCGGTCGC-    212
                            ||.||.|.||.|||||        .||.|.|..|||||.||| 
RBAM_002480      106 TTGTCTGTGCTCGTGATGATGCTGACGGCTAATGACTGCCTGCGGCCGCT    155

BSNT_01380___    213 ---------------------------------CTTTTTTCT--------    221
                                                      ||.||||||        
RBAM_002480      156 ATATATGAAGAGAAGGCCGGCTGTATATCAAGTCTCTTTTCTCCTGAGCA    205

BSNT_01380___    222 --------GCGGGGGTTTCCTAAAAGAACAGCATGGTCTGTCTTATGTCT    263
                             |||||.|||  ||               |.|||...||||||
RBAM_002480      206 ACGTTATCGCGGGAGTT--CT---------------TTTGTACAATGTCT    238

BSNT_01380___    264 TT---------------GCTCTA-------TTTTATTTTTGATCGTTCTC    291
                     .|               ||..||       |||||||...|...||.||.
RBAM_002480      239 ATAGTGTGGGGACACAGGCCGTAATGGTGCTTTTATTGGCGGAGGTGCTT    288

BSNT_01380___    292 ATCCGTAC--ATATGC-GATGTTCGGCAATGAATTTGTCATTGAT-----    333
                     ||   |||  |||.|| ||| ||||||..|   |||||.|..|||     
RBAM_002480      289 AT---TACTGATAAGCAGAT-TTCGGCTGT---TTTGTTAACGATGAATG    331

BSNT_01380___    334 ------CATTTGACTAGCATGACATTCGTTGTCTTT-------TGCGGAG    370
                           ||||||.|  |||            .||||       .||||||
RBAM_002480      332 CCGCCGCATTTGCC--GCA------------GCTTTATACGCCGGCGGAG    367

BSNT_01380___    371 ---------------TCGT--CGGCA-AATTAATCCGCAAGCTGTTGGAT    402
                                    ||||  ||.|| |.||.|||      .||||   |
RBAM_002480      368 CGGGTGTCAGTGATATCGTGCCGCCATACTTCATC------ATGTT---T    408

BSNT_01380___    403 GCGCAG-------GATA-CGGCAAAAC-------AGCAGTTTCAG---GA    434
                     |||..|       .||| |||..||||       ||.|||...||   ||
RBAM_002480      409 GCGGTGATTTATTTATATCGGAGAAACCTGCAGGAGAAGTCGAAGGTTGA    458

BSNT_01380___    435 ACTG----ACGGAGTCCCATCTGGCGCTGTCTGCTG-CACATC---AGGA    476
                     |.||    ||.|||    |.|||..|.|..||..|| |||| |   ||||
RBAM_002480      459 ATTGCTGAACCGAG----AGCTGAAGATCGCTAATGACACA-CTGAAGGA    503

BSNT_01380___    477 GCTCCATTTATATGCGAAGCAGGTTGAAGAGCTGACTGCCATTTACGAGC    526
                              ||||.|..|.|.|.||||.||    ||||.|..||||||..
RBAM_002480      504 ---------ATATTCAGACCGGATTGAGGA----ACTGGCCGTTACGAAA    540

BSNT_01380___    527 G---GAAC-AGAATGGCGCGGGAAATCCATGATACAGTGGGGCAT-----    567
                     |   |||| |||||.||||.|||..||||||||.|..|.||.|||     
RBAM_002480      541 GAAAGAACTAGAATTGCGCAGGAGCTCCATGATTCTCTCGGTCATTATCT    590

BSNT_01380___    568 ----------AAAATGACGGCCCTTCTCGTCCAGCTGCAGCTTTTG-CGT    606
                               |||||||               |..||  |..|||| ||.
RBAM_002480      591 GGCTGCTCTGAAAATGA---------------ATTTG--GAATTTGCCGG    623

BSNT_01380___    607 GAA-------TGGCA--------AAAAAGAGACAGCA--------AAAAA    633
                     |||       .||||        |.||||.|| ||||        |.||.
RBAM_002480      624 GAAGACAGCCGGGCATCAGCCGGACAAAGTGA-AGCAGATCATTCATAAG    672

BSNT_01380___    634 GCGGATGA------GACAGTAGGTGTC--TGTGAAACACTT-----GCCC    670
                     |||.||||      ||.||.|    ||  |.|.||| .|||     |.||
RBAM_002480      673 GCGCATGATCTTACGAAAGAA----TCCATTTTAAA-GCTTCGCCAGGCC    717

BSNT_01380___    671 GTGAAGCGCTTGATGATGTCCGCTTATCAGTACGCACTCTGCAAACTGAA    720
                     ||.|      ||.||.||         |||  .||.||.|||        
RBAM_002480      718 GTTA------TGCTGCTG---------CAG--GGCTCTTTGC--------    742

BSNT_01380___    721 AAC--------GATCCTTCGCTAATCGAATCGCTGAAACAGC----TGAC    758
                       |        |||          |.||      |.||.|||    ||||
RBAM_002480      743 --CGGGGCGGGGAT----------TTGA------GCAAGAGCTCCGTGAC    774

BSNT_01380___    759 AGAGGACTTTTGCA---------AAAATGCAGGAGTCA------------    787
                     |       |||.||         ||.|.||.||||.||            
RBAM_002480      775 A-------TTTTCAGCCATTTTCAAGAGGCGGGAGGCATACGCTTCGAGC    817

BSNT_01380___    788 ---------------CAACAGAATTTGCGGTCAACGG--TGATCCTGCAA    820
                                    |.|.||||   ||||  |||.|  .||| .|| ||
RBAM_002480      818 TGGAGATGGACGCGGCCATAGAA---GCGG--AACAGCCGGAT-GTG-AA    860

BSNT_01380___    821 TCATCCCGCTGTCTCTCCATCCGACCCTGATCAGAACGGTGCAGGAAGCA    870
                     .|||     |||||             |.|||| |.|.||.||||||.|.
RBAM_002480      861 GCAT-----TGTCT-------------TTATCA-ATCCGTTCAGGAAACG    891

BSNT_01380___    871 CTGACCAATGCCAAACGGCACGGCGGCGCCGCA-GCT-----TGTT----    910
                     .|.||.|||||.|.|..|||.||       .|| |||     ||||    
RBAM_002480      892 ATTACGAATGCGATAAAGCATGG-------ACATGCTTCATATGTTTCTG    934

BSNT_01380___    911 -----------------CGATAC---AGCTTGCCTGC---------ACAA    931
                                      |||.||   |..|||.| ||         |.||
RBAM_002480      935 TCCGGATTCAAAAAAACCGAAACATGATATTGGC-GCATATTCATAATAA    983

BSNT_01380___    932 CGGACAGCATCAGCCTTG--------TCATTAAGGATGACGGCAAAGGCA    973
                     |||     .|||||| ||        ||||.||  ||     ||||    
RBAM_002480      984 CGG-----CTCAGCC-TGCGGAACGATCATAAA--AT-----CAAA----   1016

BSNT_01380___    974 ATCCCGAGGCAGCACTTGGATTTGGTCT-------CTTGAATATGAAAAA   1016
                                           ||||||       .||||    ||||| 
RBAM_002480     1017 ----------------------TGGTCTGAAAGGAATTGA----GAAAA-   1039

BSNT_01380___   1017 GCGGGCAGCGGAACATGGCGGAACGATCCGCTTT---------GAAAGCG   1057
                       |.|||||.|.||.|||||||  ||..|..|||         |.|||..
RBAM_002480     1040 --GAGCAGCCGCACTTGGCGGA--GAGGCTGTTTTCTCGTCTGGGAAGGA   1085

BSNT_01380___   1058 AACGGGATCAAGGATTTACTGTAAATGCAGAATTTTCACTCGCCAATAAA   1107
                     ||||||                          ||||.||..|     |||
RBAM_002480     1086 AACGGG--------------------------TTTTGACGTG-----AAA   1104

BSNT_01380___   1108 AAATGGAGCTTCGGGCCCGTGCAGCAAAAGGAGAGTTTATCATGA----   1152
                     |.|.|||  ||     ||.|||     ||||||          ||    
RBAM_002480     1105 ATAAGGA--TT-----CCATGC-----AAGGAG----------GAATAA   1131


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