Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01380 and RBAM_002480
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:05
# Commandline: needle
# -asequence dna-align/BSNT_01380___yfiJ.1.9828.seq
# -bsequence dna-align/RBAM_002480.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01380___yfiJ-RBAM_002480.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01380___yfiJ-RBAM_002480.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01380___yfiJ
# 2: RBAM_002480
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1499
# Identity: 610/1499 (40.7%)
# Similarity: 610/1499 (40.7%)
# Gaps: 715/1499 (47.7%)
# Score: 1055.0
#
#
#=======================================
BSNT_01380___ 1 ATGTATCTGTCCATTGTGAAAGAGGATAACTGGTTTGGATATGTATTTAT 50
RBAM_002480 0 -------------------------------------------------- 0
BSNT_01380___ 51 AGCAGCAGGTGCTGCCATGTATGCAGCCAATCATGTTTTGCTGACAAAAG 100
|||.|| .|||| |||.|.|
RBAM_002480 1 --------------------ATGAAG----------ATTGC--ACATACG 18
BSNT_01380___ 101 AGACAAATGCCATC--TGGTTCTGCCTGATTGATATTGCAATCGGCTTTT 148
|....|.|| ||| .||||.||| |||..||| ||||| |||
RBAM_002480 19 AAGTTACTG--ATCAGGGGTTTTGC---ATTACTAT--CAATC----TTT 57
BSNT_01380___ 149 CGTTCGGA---TTTATCTT--TCCCGGCAC------------AGGTT--- 178
|.|.| || ||.|.||| ||||||| | |||||
RBAM_002480 58 CATGC-GATTCTTCAGCTTCCTCCCGGC-CGGGGGGAGCTGAAGGTTTTT 105
BSNT_01380___ 179 -------TGTTCATTATTATGCT--------TTGTCCGGTTGCGGTCGC- 212
||.||.|.||.||||| .||.|.|..|||||.|||
RBAM_002480 106 TTGTCTGTGCTCGTGATGATGCTGACGGCTAATGACTGCCTGCGGCCGCT 155
BSNT_01380___ 213 ---------------------------------CTTTTTTCT-------- 221
||.||||||
RBAM_002480 156 ATATATGAAGAGAAGGCCGGCTGTATATCAAGTCTCTTTTCTCCTGAGCA 205
BSNT_01380___ 222 --------GCGGGGGTTTCCTAAAAGAACAGCATGGTCTGTCTTATGTCT 263
|||||.||| || |.|||...||||||
RBAM_002480 206 ACGTTATCGCGGGAGTT--CT---------------TTTGTACAATGTCT 238
BSNT_01380___ 264 TT---------------GCTCTA-------TTTTATTTTTGATCGTTCTC 291
.| ||..|| |||||||...|...||.||.
RBAM_002480 239 ATAGTGTGGGGACACAGGCCGTAATGGTGCTTTTATTGGCGGAGGTGCTT 288
BSNT_01380___ 292 ATCCGTAC--ATATGC-GATGTTCGGCAATGAATTTGTCATTGAT----- 333
|| ||| |||.|| ||| ||||||..| |||||.|..|||
RBAM_002480 289 AT---TACTGATAAGCAGAT-TTCGGCTGT---TTTGTTAACGATGAATG 331
BSNT_01380___ 334 ------CATTTGACTAGCATGACATTCGTTGTCTTT-------TGCGGAG 370
||||||.| ||| .|||| .||||||
RBAM_002480 332 CCGCCGCATTTGCC--GCA------------GCTTTATACGCCGGCGGAG 367
BSNT_01380___ 371 ---------------TCGT--CGGCA-AATTAATCCGCAAGCTGTTGGAT 402
|||| ||.|| |.||.||| .|||| |
RBAM_002480 368 CGGGTGTCAGTGATATCGTGCCGCCATACTTCATC------ATGTT---T 408
BSNT_01380___ 403 GCGCAG-------GATA-CGGCAAAAC-------AGCAGTTTCAG---GA 434
|||..| .||| |||..|||| ||.|||...|| ||
RBAM_002480 409 GCGGTGATTTATTTATATCGGAGAAACCTGCAGGAGAAGTCGAAGGTTGA 458
BSNT_01380___ 435 ACTG----ACGGAGTCCCATCTGGCGCTGTCTGCTG-CACATC---AGGA 476
|.|| ||.||| |.|||..|.|..||..|| |||| | ||||
RBAM_002480 459 ATTGCTGAACCGAG----AGCTGAAGATCGCTAATGACACA-CTGAAGGA 503
BSNT_01380___ 477 GCTCCATTTATATGCGAAGCAGGTTGAAGAGCTGACTGCCATTTACGAGC 526
||||.|..|.|.|.||||.|| ||||.|..||||||..
RBAM_002480 504 ---------ATATTCAGACCGGATTGAGGA----ACTGGCCGTTACGAAA 540
BSNT_01380___ 527 G---GAAC-AGAATGGCGCGGGAAATCCATGATACAGTGGGGCAT----- 567
| |||| |||||.||||.|||..||||||||.|..|.||.|||
RBAM_002480 541 GAAAGAACTAGAATTGCGCAGGAGCTCCATGATTCTCTCGGTCATTATCT 590
BSNT_01380___ 568 ----------AAAATGACGGCCCTTCTCGTCCAGCTGCAGCTTTTG-CGT 606
||||||| |..|| |..|||| ||.
RBAM_002480 591 GGCTGCTCTGAAAATGA---------------ATTTG--GAATTTGCCGG 623
BSNT_01380___ 607 GAA-------TGGCA--------AAAAAGAGACAGCA--------AAAAA 633
||| .|||| |.||||.|| |||| |.||.
RBAM_002480 624 GAAGACAGCCGGGCATCAGCCGGACAAAGTGA-AGCAGATCATTCATAAG 672
BSNT_01380___ 634 GCGGATGA------GACAGTAGGTGTC--TGTGAAACACTT-----GCCC 670
|||.|||| ||.||.| || |.|.||| .||| |.||
RBAM_002480 673 GCGCATGATCTTACGAAAGAA----TCCATTTTAAA-GCTTCGCCAGGCC 717
BSNT_01380___ 671 GTGAAGCGCTTGATGATGTCCGCTTATCAGTACGCACTCTGCAAACTGAA 720
||.| ||.||.|| ||| .||.||.|||
RBAM_002480 718 GTTA------TGCTGCTG---------CAG--GGCTCTTTGC-------- 742
BSNT_01380___ 721 AAC--------GATCCTTCGCTAATCGAATCGCTGAAACAGC----TGAC 758
| ||| |.|| |.||.||| ||||
RBAM_002480 743 --CGGGGCGGGGAT----------TTGA------GCAAGAGCTCCGTGAC 774
BSNT_01380___ 759 AGAGGACTTTTGCA---------AAAATGCAGGAGTCA------------ 787
| |||.|| ||.|.||.||||.||
RBAM_002480 775 A-------TTTTCAGCCATTTTCAAGAGGCGGGAGGCATACGCTTCGAGC 817
BSNT_01380___ 788 ---------------CAACAGAATTTGCGGTCAACGG--TGATCCTGCAA 820
|.|.|||| |||| |||.| .||| .|| ||
RBAM_002480 818 TGGAGATGGACGCGGCCATAGAA---GCGG--AACAGCCGGAT-GTG-AA 860
BSNT_01380___ 821 TCATCCCGCTGTCTCTCCATCCGACCCTGATCAGAACGGTGCAGGAAGCA 870
.||| ||||| |.|||| |.|.||.||||||.|.
RBAM_002480 861 GCAT-----TGTCT-------------TTATCA-ATCCGTTCAGGAAACG 891
BSNT_01380___ 871 CTGACCAATGCCAAACGGCACGGCGGCGCCGCA-GCT-----TGTT---- 910
.|.||.|||||.|.|..|||.|| .|| ||| ||||
RBAM_002480 892 ATTACGAATGCGATAAAGCATGG-------ACATGCTTCATATGTTTCTG 934
BSNT_01380___ 911 -----------------CGATAC---AGCTTGCCTGC---------ACAA 931
|||.|| |..|||.| || |.||
RBAM_002480 935 TCCGGATTCAAAAAAACCGAAACATGATATTGGC-GCATATTCATAATAA 983
BSNT_01380___ 932 CGGACAGCATCAGCCTTG--------TCATTAAGGATGACGGCAAAGGCA 973
||| .|||||| || ||||.|| || ||||
RBAM_002480 984 CGG-----CTCAGCC-TGCGGAACGATCATAAA--AT-----CAAA---- 1016
BSNT_01380___ 974 ATCCCGAGGCAGCACTTGGATTTGGTCT-------CTTGAATATGAAAAA 1016
|||||| .|||| |||||
RBAM_002480 1017 ----------------------TGGTCTGAAAGGAATTGA----GAAAA- 1039
BSNT_01380___ 1017 GCGGGCAGCGGAACATGGCGGAACGATCCGCTTT---------GAAAGCG 1057
|.|||||.|.||.||||||| ||..|..||| |.|||..
RBAM_002480 1040 --GAGCAGCCGCACTTGGCGGA--GAGGCTGTTTTCTCGTCTGGGAAGGA 1085
BSNT_01380___ 1058 AACGGGATCAAGGATTTACTGTAAATGCAGAATTTTCACTCGCCAATAAA 1107
|||||| ||||.||..| |||
RBAM_002480 1086 AACGGG--------------------------TTTTGACGTG-----AAA 1104
BSNT_01380___ 1108 AAATGGAGCTTCGGGCCCGTGCAGCAAAAGGAGAGTTTATCATGA---- 1152
|.|.||| || ||.||| |||||| ||
RBAM_002480 1105 ATAAGGA--TT-----CCATGC-----AAGGAG----------GAATAA 1131
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