Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00259 and RBAM_001760

See DNA alignment / Visit BSNT_00259 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:04
# Commandline: needle
#    -asequence pep-align/BSNT_00259___ybaJ.1.9828.seq
#    -bsequence pep-align/RBAM_001760___ybaJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00259___ybaJ-RBAM_001760___ybaJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00259___ybaJ-RBAM_001760___ybaJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00259___ybaJ
# 2: RBAM_001760___ybaJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 255
# Identity:     198/255 (77.6%)
# Similarity:   227/255 (89.0%)
# Gaps:           0/255 ( 0.0%)
# Score: 1069.0
# 
#
#=======================================

BSNT_00259___      1 MNALVAHNSKAWDKKVETGNEWTVAVEQQVIEQAKKGNWDIRVTPMKDVP     50
                     ||.||.||||||||||||||||||||:...|.:||||||.||:||.||||
RBAM_001760__      1 MNKLVIHNSKAWDKKVETGNEWTVAVDSHTIGEAKKGNWSIRMTPGKDVP     50

BSNT_00259___     51 KDWFPPVKGLKVLCLASGGGQQGPVLAAAGADVTVLDNSEKQLNQDKMIA    100
                     .||||.:.||||||||||||||||||||||||||:.|||||||.||:|:|
RBAM_001760__     51 ADWFPLIDGLKVLCLASGGGQQGPVLAAAGADVTIFDNSEKQLAQDRMVA    100

BSNT_00259___    101 ERDGLTIHTVKGSMDDLSVFNDESFDVIVHPVANVFVENVLPVWKEAHRV    150
                     |||.||:.||||||:|||.|:|||||.|||||:|.||:.|||||||||||
RBAM_001760__    101 ERDDLTLRTVKGSMNDLSCFDDESFDFIVHPVSNCFVDTVLPVWKEAHRV    150

BSNT_00259___    151 LKRNGVLISGFVNPVVFLFDTELEQQGVLKVKHSIPYADPEDLPKHKVKK    200
                     ||:.|.|:||||||||||||.:|||:||||||:|||::|.:||.|.|||:
RBAM_001760__    151 LKKGGSLVSGFVNPVVFLFDMDLEQEGVLKVKYSIPFSDEKDLSKKKVKE    200

BSNT_00259___    201 LIENNEALEFGHSLEDQIKGQIDAGFIVTGFYEDKGGFVLDQYIHTYSAT    250
                     ||:|:|||||||:|||||||||||||:|.||||||||.|||:||:|||.|
RBAM_001760__    201 LIDNHEALEFGHTLEDQIKGQIDAGFMVAGFYEDKGGLVLDEYINTYSVT    250

BSNT_00259___    251 RSVKV    255
                     ||:|:
RBAM_001760__    251 RSIKI    255


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.