Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00259 and RBAM_001760

See Amino acid alignment / Visit BSNT_00259 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:04
# Commandline: needle
#    -asequence dna-align/BSNT_00259___ybaJ.1.9828.seq
#    -bsequence dna-align/RBAM_001760___ybaJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00259___ybaJ-RBAM_001760___ybaJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00259___ybaJ-RBAM_001760___ybaJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00259___ybaJ
# 2: RBAM_001760___ybaJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 787
# Identity:     563/787 (71.5%)
# Similarity:   563/787 (71.5%)
# Gaps:          38/787 ( 4.8%)
# Score: 1928.5
# 
#
#=======================================

BSNT_00259___      1 ATGAATGCGTTAGTAGCTCATAATAGCAAAGCCTGGGATAAAAAAGTAGA     50
                     ||||||..||||||....|||||.|||||.||.||||||||||||||.||
RBAM_001760__      1 ATGAATAAGTTAGTCATACATAACAGCAAGGCATGGGATAAAAAAGTCGA     50

BSNT_00259___     51 AACAGGCAATGAATGGACTGTTGCTGTTGAGCAGCA-------GGTGATC     93
                     ||||||||||||||||||.|||||.|||||....||       ||||   
RBAM_001760__     51 AACAGGCAATGAATGGACGGTTGCGGTTGATTCTCATACGATTGGTG---     97

BSNT_00259___     94 GAACAAGCAAAAAAAGGCAATTGGGATATAAGGGTAACACCAATGAAAGA    143
                         ||||.|||||||||||||||...||.||..|.||.||....|||||
RBAM_001760__     98 ----AAGCGAAAAAAGGCAATTGGAGCATCAGAATGACCCCCGGAAAAGA    143

BSNT_00259___    144 TGTACCGAAGGATTGGTTTCCGCCTGTCA---AAGGTCTGAAAGTACTCT    190
                     |||.|||..||||||||||||||   |||   |.||||||||.||.||.|
RBAM_001760__    144 TGTGCCGGCGGATTGGTTTCCGC---TCATAGACGGTCTGAAGGTTCTTT    190

BSNT_00259___    191 GTTTAGCATCAGGCGGCGGCCAGCAGGGCCCAGTTTTGGCAGCCGCAGGC    240
                     ||.|.||.|||||.||.||.|||||.||.||.||..|.||.||.|||||.
RBAM_001760__    191 GTCTCGCTTCAGGAGGAGGACAGCAAGGGCCGGTCCTTGCTGCTGCAGGA    240

BSNT_00259___    241 GCGGATGTCACCGTACTAGATAACTCAGAAAAACAGCTGAATCAGGATAA    290
                     |||||.||.|||.|..|.||.||.||.|||||||||||....||.||.|.
RBAM_001760__    241 GCGGACGTGACCATCTTTGACAATTCGGAAAAACAGCTTGCGCAAGACAG    290

BSNT_00259___    291 AATGATTGCTGAGCGAGATGGTCTCACAATACACACTGTCAAAGGAAGCA    340
                     ||||.||||.|||||.||.|.|||.||..|.|..|||||||||||.||||
RBAM_001760__    291 AATGGTTGCCGAGCGGGACGATCTTACGCTTCGGACTGTCAAAGGCAGCA    340

BSNT_00259___    341 TGGACGATTTAAG-TGTATTTAATGATGAATCATTTGATGTCATTGTACA    389
                     ||.|.|||.|.|| ||| |||.|||||||.|||||||||.|.||.||.||
RBAM_001760__    341 TGAATGATCTGAGCTGT-TTTGATGATGAGTCATTTGATTTTATCGTGCA    389

BSNT_00259___    390 TCCTGTTGCCAATGTTTTTGTTGAGAATGTCCTCCCGGTATGGAAGGAAG    439
                     .||.||..|.|||...||||||||.|..||.||.|||||||||||.||||
RBAM_001760__    390 CCCGGTATCGAATTGCTTTGTTGATACGGTTCTTCCGGTATGGAAAGAAG    439

BSNT_00259___    440 CGCACCGTGTGTTGAAAAGGAACGGCG----TTCTAATCTCGGGTTTTGT    485
                     |.||.||.||.||||||   ||.||||    || ||.||||.||||||||
RBAM_001760__    440 CTCATCGCGTATTGAAA---AAAGGCGGGTCTT-TAGTCTCCGGTTTTGT    485

BSNT_00259___    486 CAATCCTGTTGTATTTCTGTTTGATACAGAATTAGAACAGCAAGGTGTTT    535
                     .|||||.||.||.||..|.|||||||..||.|||||.|||.||||.||..
RBAM_001760__    486 AAATCCCGTCGTGTTCTTATTTGATATGGATTTAGAGCAGGAAGGCGTAC    535

BSNT_00259___    536 TAAAAGTAAAACACTCCATTCCATACGCTGACCCAGAAGATCTTCCGA--    583
                     ||||||||||..|.||||||||.|...|.||...|.||||.||   ||  
RBAM_001760__    536 TAAAAGTAAAGTATTCCATTCCGTTTTCGGATGAAAAAGACCT---GAGT    582

BSNT_00259___    584 AACATAAAGTGAAAA--AACTGATCGAAAATAATGAGGCTTTGGAATTCG    631
                     ||.|.|||| |.|||  ||||.||.||.|||.||||.||..|.|||||||
RBAM_001760__    583 AAGAAAAAG-GTAAAGGAACTTATTGATAATCATGAAGCGCTTGAATTCG    631

BSNT_00259___    632 GCCATTCCTTAGAAGACCAAATCAAAGGCCAAATTGATGCCGGTTTTATC    681
                     |||||.|..|.||.||.|||||.|||||.||.|||||.||.||.||.||.
RBAM_001760__    632 GCCATACGCTGGAGGATCAAATTAAAGGTCAGATTGACGCAGGCTTCATG    681

BSNT_00259___    682 GTTACTGGTTTTTATGAAGATAAAGGCGGGTTTGTATTAGACCAATATAT    731
                     |||.|.||||||||.||.||.||||||||..|.||..|.||..||||.||
RBAM_001760__    682 GTTGCCGGTTTTTACGAGGACAAAGGCGGCCTCGTGCTGGATGAATACAT    731

BSNT_00259___    732 CCATACATATTCTGCAACAAGAAGCGTGAAAGTATGA    768
                     ..|||||||.||.|.||||||||||.|.|||.|||.|
RBAM_001760__    732 TAATACATACTCCGTAACAAGAAGCATTAAAATATAA    768


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00259 and RBAM_001760

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
