Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00197 and RBAM_001230

See DNA alignment / Visit BSNT_00197 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:58
# Commandline: needle
#    -asequence pep-align/BSNT_00197___sigH.1.9828.seq
#    -bsequence pep-align/RBAM_001230___sigH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00197___sigH-RBAM_001230___sigH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00197___sigH-RBAM_001230___sigH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00197___sigH
# 2: RBAM_001230___sigH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 218
# Identity:     214/218 (98.2%)
# Similarity:   217/218 (99.5%)
# Gaps:           0/218 ( 0.0%)
# Score: 1078.0
# 
#
#=======================================

BSNT_00197___      1 MNLQNNKGKFNKEQFCQLEDEQVIEKVHVGDSDALDYLITKYRNFVRAKA     50
                     |||||:||||||.|||||||||||||||||||||||||||||||||||||
RBAM_001230__      1 MNLQNSKGKFNKVQFCQLEDEQVIEKVHVGDSDALDYLITKYRNFVRAKA     50

BSNT_00197___     51 RSYFLIGADREDIVQEGMIGLYKSIRDFKEDKLTSFKAFAELCITRQIIT    100
                     ||||||||||||||||||||||||||||:|||||||||||||||||||||
RBAM_001230__     51 RSYFLIGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAELCITRQIIT    100

BSNT_00197___    101 AIKTATRQKHIPLNSYVSLDKPIFDEESDRTLLDVISGAKTLNPEEMIIN    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001230__    101 AIKTATRQKHIPLNSYVSLDKPIFDEESDRTLLDVISGAKTLNPEEMIIN    150

BSNT_00197___    151 QEEFDDIEMKMGELLSDLERKVLVLYLDGRSYQEISDELNRHVKSIDNAL    200
                     |||||||||||||||||||||||||||||||||||||:||||||||||||
RBAM_001230__    151 QEEFDDIEMKMGELLSDLERKVLVLYLDGRSYQEISDDLNRHVKSIDNAL    200

BSNT_00197___    201 QRVKRKLEKYLEIREISL    218
                     ||||||||||||||||||
RBAM_001230__    201 QRVKRKLEKYLEIREISL    218


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