Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00197 and RBAM_001230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_00197___sigH.1.9828.seq
# -bsequence dna-align/RBAM_001230___sigH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00197___sigH-RBAM_001230___sigH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00197___sigH-RBAM_001230___sigH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00197___sigH
# 2: RBAM_001230___sigH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 657
# Identity: 574/657 (87.4%)
# Similarity: 574/657 (87.4%)
# Gaps: 0/657 ( 0.0%)
# Score: 2538.0
#
#
#=======================================
BSNT_00197___ 1 GTGAATCTACAGAACAACAAGGGAAAATTCAACAAAGAGCAGTTTTGCCA 50
||||||||||||||||.|||||||||.||||||||||.|||.||||||||
RBAM_001230__ 1 GTGAATCTACAGAACAGCAAGGGAAAGTTCAACAAAGTGCAATTTTGCCA 50
BSNT_00197___ 51 GTTGGAGGACGAGCAGGTCATTGAAAAGGTTCATGTTGGGGACAGTGATG 100
||||||||||||||||||||||||||||||||||||||||||.|||||||
RBAM_001230__ 51 GTTGGAGGACGAGCAGGTCATTGAAAAGGTTCATGTTGGGGATAGTGATG 100
BSNT_00197___ 101 CGTTAGATTACTTGATTACGAAGTACCGAAACTTTGTTCGGGCAAAAGCA 150
||||||||||||||||||||||||||||.||.|||||.|||||.||||||
RBAM_001230__ 101 CGTTAGATTACTTGATTACGAAGTACCGTAATTTTGTACGGGCGAAAGCA 150
BSNT_00197___ 151 AGATCCTATTTCTTAATAGGGGCGGACAGAGAGGATATTGTTCAGGAAGG 200
||.||.|||||.|||||||||||.||||||||.||||||||.||||||||
RBAM_001230__ 151 AGGTCTTATTTTTTAATAGGGGCCGACAGAGAAGATATTGTACAGGAAGG 200
BSNT_00197___ 201 CATGATAGGCCTCTATAAGTCTATTCGTGACTTCAAAGAGGACAAGCTTA 250
.|||||||||.|.|||||||||||.||.|||||.|.||||||||||||||
RBAM_001230__ 201 GATGATAGGCTTATATAAGTCTATCCGAGACTTTAGAGAGGACAAGCTTA 250
BSNT_00197___ 251 CCTCATTCAAAGCTTTCGCAGAATTATGTATTACCCGCCAAATTATTACC 300
|.|||||.||||||||.|||||||||||.|||||||||||.|||||||||
RBAM_001230__ 251 CTTCATTTAAAGCTTTTGCAGAATTATGCATTACCCGCCAGATTATTACC 300
BSNT_00197___ 301 GCAATAAAGACAGCTACTCGCCAGAAACACATTCCTTTGAATTCCTACGT 350
|||||||||||||||||.||.|||||||||||||||||.||||||||.||
RBAM_001230__ 301 GCAATAAAGACAGCTACCCGTCAGAAACACATTCCTTTAAATTCCTATGT 350
BSNT_00197___ 351 CTCATTAGATAAACCGATTTTTGATGAAGAATCAGACCGAACGCTGCTGG 400
.||.|||||.|||||.|||||||||||||||||.|||.||||.|||||.|
RBAM_001230__ 351 TTCTTTAGACAAACCTATTTTTGATGAAGAATCTGACAGAACACTGCTTG 400
BSNT_00197___ 401 ATGTCATTTCAGGAGCGAAAACCTTAAATCCTGAGGAAATGATCATTAAT 450
|||||||||||||.||.|||||.|||||||||||.||.|||||.||||||
RBAM_001230__ 401 ATGTCATTTCAGGCGCTAAAACGTTAAATCCTGAAGAGATGATTATTAAT 450
BSNT_00197___ 451 CAGGAAGAATTTGATGATATTGAAATGAAAATGGGAGAACTATTAAGTGA 500
||||||||||||||||||||.||||||||||||||||||||..|.||.||
RBAM_001230__ 451 CAGGAAGAATTTGATGATATCGAAATGAAAATGGGAGAACTGCTGAGCGA 500
BSNT_00197___ 501 TTTAGAGAGAAAAGTACTCGTCTTATATCTCGACGGGAGAAGTTACCAAG 550
|.|.||||||||.||.||.||.||.||..|.|||||.|||||||||||||
RBAM_001230__ 501 TCTGGAGAGAAAGGTGCTTGTTTTGTACTTGGACGGAAGAAGTTACCAAG 550
BSNT_00197___ 551 AGATTTCTGATGAACTGAACCGACATGTGAAATCGATCGACAATGCCCTT 600
|||||||.|||||..|.||||||||.||.|||||.|||||.||||||||.
RBAM_001230__ 551 AGATTTCAGATGACTTAAACCGACACGTAAAATCAATCGATAATGCCCTG 600
BSNT_00197___ 601 CAGCGTGTGAAACGCAAGCTGGAGAAGTACTTGGAAATTCGCGAAATCAG 650
|||||.|||||.||||||||.||.|||||.||.|||||..|.||.|||||
RBAM_001230__ 601 CAGCGCGTGAAGCGCAAGCTTGAAAAGTATTTAGAAATAAGAGAGATCAG 650
BSNT_00197___ 651 TTTGTAA 657
..||||.
RBAM_001230__ 651 CCTGTAG 657
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