Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00195 and RBAM_001210

See DNA alignment / Visit BSNT_00195 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:58
# Commandline: needle
#    -asequence pep-align/BSNT_00195___yacO.1.9828.seq
#    -bsequence pep-align/RBAM_001210___yacO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00195___yacO-RBAM_001210___yacO.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00195___yacO-RBAM_001210___yacO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00195___yacO
# 2: RBAM_001210___yacO
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 249
# Identity:     231/249 (92.8%)
# Similarity:   245/249 (98.4%)
# Gaps:           0/249 ( 0.0%)
# Score: 1194.0
# 
#
#=======================================

BSNT_00195___      1 MSQQHDYVIGKNAVIETLKSDRKLYKLWMAENTVKGQAQQVIELAKKQGI     50
                     |||||||||||||||||||||||||||||||||||||||||:|||||:|:
RBAM_001210__      1 MSQQHDYVIGKNAVIETLKSDRKLYKLWMAENTVKGQAQQVMELAKKRGV     50

BSNT_00195___     51 TIQYVPRKKLDQMVTGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFL    100
                     |||:||||||||||.||||||||||||||||:||:|||.|||:|||||||
RBAM_001210__     51 TIQFVPRKKLDQMVEGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFL    100

BSNT_00195___    101 ILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEH    150
                     ||||||||||||||||||||||||||:||||||||||:||||||||||||
RBAM_001210__    101 ILDELEDPHNLGSIMRTADAVGAHGIMIPKRRAVGLTSTVAKASTGAIEH    150

BSNT_00195___    151 IPVARVTNLARTLEEMKERGIWVVGTDASAREDYRNMDGNMPLALVIGSE    200
                     |||.:||||||||:|||||||||||||||||||||:|||.||||||||||
RBAM_001210__    151 IPVVKVTNLARTLDEMKERGIWVVGTDASAREDYRSMDGKMPLALVIGSE    200

BSNT_00195___    201 GKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYRKRNPVGE    249
                     |:||||||||||||||||||||||||||||||||||||||||||||:||
RBAM_001210__    201 GRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYRKRNPLGE    249


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