Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00132 and RBAM_000870

See DNA alignment / Visit BSNT_00132 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence pep-align/BSNT_00132___pabC.1.9828.seq
#    -bsequence pep-align/RBAM_000870___pabC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00132___pabC-RBAM_000870___pabC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00132___pabC-RBAM_000870___pabC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00132___pabC
# 2: RBAM_000870___pabC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 297
# Identity:     200/297 (67.3%)
# Similarity:   240/297 (80.8%)
# Gaps:           7/297 ( 2.4%)
# Score: 1047.0
# 
#
#=======================================

BSNT_00132___      1 -MIYVNGRYMEEKDAVLSPFDHGFLYGIGVFETFRLYEGCPFLLDWHIER     49
                      :||:||:|:|||:|.|||||||:|||||.|||||||.|.|||.|.|:.|
RBAM_000870__      1 MIIYLNGQYIEEKEAALSPFDHGYLYGIGAFETFRLYSGRPFLPDAHVAR     50

BSNT_00132___     50 LERALKDLQIEYTVSKHEILEMLDKLLKLNDIKDGNARVRLNISAGISDK     99
                     |.|||:||||.|.|:|.|:|:||.:||.|||||||:||||||||||:|||
RBAM_000870__     51 LNRALRDLQIAYEVNKQELLDMLRRLLLLNDIKDGSARVRLNISAGVSDK    100

BSNT_00132___    100 GFVAQTYDKPTVLCFVNQLKPESLPLQKEGKVLSIRRNTPEGSFRLKSHH    149
                     ||.||||:|||||||||||..|:||:||||::||||||||||:|||||||
RBAM_000870__    101 GFAAQTYEKPTVLCFVNQLNLETLPVQKEGRLLSIRRNTPEGTFRLKSHH    150

BSNT_00132___    150 YLNNMYAKREIGNDPRVEGIFLTEDGAVAEGIISNVFWRKGRCIYTPSLD    199
                     |||||||||||||||.:||||||.:|.|||||:||||||||..::|||||
RBAM_000870__    151 YLNNMYAKREIGNDPNLEGIFLTGEGDVAEGIVSNVFWRKGDKVFTPSLD    200

BSNT_00132___    200 TGILDGVTRRFIIENAKNIGLELKTGRYELEALLTADEAWMTNSVLEIIP    249
                     |||||||||:|:|:..|..|.|:..||:..:::|.|||||:|||||||||
RBAM_000870__    201 TGILDGVTRQFVIDELKRQGTEVTEGRFRFQSMLEADEAWLTNSVLEIIP    250

BSNT_00132___    250 FTKIEEVNYGSQSGEATSALQLLYKKEIKNM---IHEKGGRAWRSTQ    293
                     |:|||||.....||:....|:..|::||..|   ..|:.|.|..   
RBAM_000870__    251 FSKIEEVPLPGVSGKTVQLLRKQYQQEINKMNVQEEEQNGAANN---    294


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.