Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00132 and RBAM_000870
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:55
# Commandline: needle
# -asequence dna-align/BSNT_00132___pabC.1.9828.seq
# -bsequence dna-align/RBAM_000870___pabC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00132___pabC-RBAM_000870___pabC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00132___pabC-RBAM_000870___pabC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00132___pabC
# 2: RBAM_000870___pabC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 956
# Identity: 634/956 (66.3%)
# Similarity: 634/956 (66.3%)
# Gaps: 145/956 (15.2%)
# Score: 2106.5
#
#
#=======================================
BSNT_00132___ 1 ---ATGATATATGTGAACGGCCGGTATATGGAGGAGAAAGATGCAGTTCT 47
||.||||||.||||.||.|..|||||.|||||||||||.||.|..||
RBAM_000870__ 1 GTGATTATATATTTGAATGGTCAATATATAGAGGAGAAAGAAGCGGCGCT 50
BSNT_00132___ 48 TTCTCCTTTTGACCATGGGTTTTTATATGGGATCGGTGTTTTCGAAACCT 97
||||||||||||||||||.|.|.|.||.||||||||.|..|||||.||.|
RBAM_000870__ 51 TTCTCCTTTTGACCATGGTTATCTGTACGGGATCGGCGCGTTCGAGACGT 100
BSNT_00132___ 98 TCAGGCTCTACGAAGGCTGCCCGTTTTTGCTTGATTGGCATATAGAAAGG 147
|||||||.|||...|||.|.||||||.|||..|||..||||.|.|..|||
RBAM_000870__ 101 TCAGGCTTTACAGCGGCCGGCCGTTTCTGCCGGATGCGCATGTCGCCAGG 150
BSNT_00132___ 148 CTTGAAC-GCGCGCTTAAGGATCTGCAAATCGAATAT-------ACTGTT 189
| |.||| |.||||||..|||||||||.||.|.|||| ||
RBAM_000870__ 151 C-TCAACAGGGCGCTTCGGGATCTGCAGATTGCATATGAGGTGAAC---- 195
BSNT_00132___ 190 TCAAAGCATGAGATCCTTGAGATGCT--GGACA-AGCTGCTTAAGCTAAA 236
||.||.|||.|.|||||.||||| |||.| .|.|||| .||.||
RBAM_000870__ 196 ---AAACAGGAGCTGCTTGATATGCTTCGGAGACTGTTGCT---CCTCAA 239
BSNT_00132___ 237 TGATATCAAGGATGGTAATGCCCGCGTCAGACTGAACATATCAGCGGGAA 286
|||.||||||||.||.|..||.||.|||.|.||.|||||.||.||.||..
RBAM_000870__ 240 TGACATCAAGGACGGCAGCGCGCGTGTCCGGCTTAACATCTCGGCAGGCG 289
BSNT_00132___ 287 TCAGCGATAAAGGCTTTGTCGCCCAGACGTACGATAAGCCGACCGTTTTA 336
||||||||||.||.||||.|||.|||||.||.||.|||||||||||..|.
RBAM_000870__ 290 TCAGCGATAAGGGATTTGCCGCGCAGACTTATGAAAAGCCGACCGTCCTT 339
BSNT_00132___ 337 TGCTTTGTGAATCAGCTGAAACCAGAAAGCCTTCCTTTGCAAAAAGAAGG 386
||.||.||.||.|||||.||.|..||||..||.|||.|.|||||||||||
RBAM_000870__ 340 TGTTTCGTCAACCAGCTCAATCTGGAAACTCTGCCTGTTCAAAAAGAAGG 389
BSNT_00132___ 387 GAAGGTTTTATCGATACGGAGAAACACTCCTGAGGGATCGTTCCGGTTAA 436
.|.|.||.|.||.||..|||||||.||.|||||.|||.|.||.|||||||
RBAM_000870__ 390 CAGGCTTCTCTCTATCAGGAGAAATACGCCTGAAGGAACTTTTCGGTTAA 439
BSNT_00132___ 437 AATCTCATCATTATCTAAATAATATGTATGCGAAACGGGAAATTGGAAAT 486
||||.|||||.|||.||||.||.||||||||.||||||||.||.||.|||
RBAM_000870__ 440 AATCCCATCACTATTTAAACAACATGTATGCTAAACGGGAGATCGGGAAT 489
BSNT_00132___ 487 GATCCGCGTGTCGAGGGAATTTTCCT-AACGGAGGATGGAGCTGTTGCAG 535
|||||...|.|.||.||.|||||||| |.|||| ||.||||.|||.||.|
RBAM_000870__ 490 GATCCCAATCTTGAAGGCATTTTCCTGACCGGA-GAAGGAGATGTCGCGG 538
BSNT_00132___ 536 AGGGTATCATATCTAATGTCTTTTGGAGAAAAGGTCGTTGTA-------T 578
|.||.||..|.||.||.||.||||||.||||||| | |
RBAM_000870__ 539 AAGGCATTGTCTCCAACGTGTTTTGGCGAAAAGG-------AGACAAGGT 581
BSNT_00132___ 579 CTATACGCCATCGCTT-GATACTGGTATTCTGGACGGCGTCACGAGACGT 627
||.|||.||||| ||| |||||.||.|||||.||||||||.|||||||..
RBAM_000870__ 582 CTTTACACCATC-CTTGGATACAGGCATTCTCGACGGCGTAACGAGACAG 630
BSNT_00132___ 628 TTTATCATAGA--AAATGCAAAGAATATCGGC------CTGGAGCTCA-- 667
|||.|.||.|| ||.||.|| |||| |.|.|| |||
RBAM_000870__ 631 TTTGTTATTGATGAATTGAAA-------CGGCAGGGGACAGAAG-TCACC 672
BSNT_00132___ 668 -AAACGGGCCGAT--------------ATGAGCTAGAAGCTCTCTTGACA 702
|| ||||||| ||| ||||| |
RBAM_000870__ 673 GAA---GGCCGATTCCGTTTTCAATCAATG-------------CTTGA-A 705
BSNT_00132___ 703 GCTGACGAAGCGTGGATGACGAACTCGGTTCTTGAAATCATCCCGTTTAC 752
||.||.|||||.|||.||||.|||||.||.||||||||||||||||||.|
RBAM_000870__ 706 GCGGATGAAGCATGGTTGACAAACTCCGTGCTTGAAATCATCCCGTTTTC 755
BSNT_00132___ 753 TAAAATAGAAGAAGTAAACTATGGAAGCC-----------AAAGCGGAGA 791
|||||||||.||||| ||| ..||||||.|
RBAM_000870__ 756 TAAAATAGAGGAAGT-----------GCCGCTGCCCGGAGTGAGCGGAAA 794
BSNT_00132___ 792 A-----GCAA--CCTCCGCTCTTCAATTGTTA-----TACAAAAAAGAAA 829
| |||| .||||| || ||..|..|.||||
RBAM_000870__ 795 AACGGTGCAATTGCTCCG------------TAAGCAGTATCAGCAGGAAA 832
BSNT_00132___ 830 TAAAGAACATGATTCATGAAAAG--GGAGGAAGAGCATGGCGCAGCACAC 877
||||.||.|||| |||.|.|| |||||||.|..|||||||||||.||
RBAM_000870__ 833 TAAACAAAATGA---ATGTACAGGAGGAGGAACAAAATGGCGCAGCAAAC 879
BSNT_00132___ 878 AATAG- 882
|||.|
RBAM_000870__ 880 AATTGA 885
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