Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00126 and RBAM_000830

See DNA alignment / Visit BSNT_00126 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence pep-align/BSNT_00126___yacD.1.9828.seq
#    -bsequence pep-align/RBAM_000830___yacD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00126___yacD-RBAM_000830___yacD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00126___yacD-RBAM_000830___yacD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00126___yacD
# 2: RBAM_000830___yacD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 297
# Identity:     235/297 (79.1%)
# Similarity:   266/297 (89.6%)
# Gaps:           1/297 ( 0.3%)
# Score: 1215.0
# 
#
#=======================================

BSNT_00126___      1 MKSRTIWTIILGALLVCCIAVAYTLTKSQTGASSSGESIATIGGKSVTRE     50
                     |||||:.|||:.|||||.:.|||.||||| .|.||.|||||||.|.:||:
RBAM_000830__      1 MKSRTLLTIIVAALLVCSVTVAYKLTKSQ-AAGSSEESIATIGDKHITRQ     49

BSNT_00126___     51 EWLKEMEDQYGKSTLEDMINVRVVEQLAKKNNLKISKSEVDREFLLIKAV    100
                     :|:|:|||||||||||||||.:|||:||:||.|.:|.||:||||||||||
RBAM_000830__     50 DWMKKMEDQYGKSTLEDMINAQVVEELAEKNKLTVSNSELDREFLLIKAV     99

BSNT_00126___    101 NNSFYEDEHTTEKEWKDQIRYNILLEELLTRDIDISNKELESFYNKNKEL    150
                     :||||||.|.|||||:||||||||||||||:|||||:||::|||||||||
RBAM_000830__    100 DNSFYEDSHITEKEWRDQIRYNILLEELLTKDIDISDKEMQSFYNKNKEL    149

BSNT_00126___    151 YQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYTSPYG    200
                     |.|||||||||||||:::||..||.:|||||||||||||||||||||.||
RBAM_000830__    150 YHFDDSYRIRHIVVKNKDEADRVLADLKGGSSFEAVAAERSTDRYTSQYG    199

BSNT_00126___    201 GDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEPIKVNNGYAIIQLKEKLK    250
                     ||||||||..:|||.|||.|||.|||||||.|||||::|||:||||||||
RBAM_000830__    200 GDLGFVTENQENIPQAYITEAKKLKEDEWSVEPIKVSSGYAVIQLKEKLK    249

BSNT_00126___    251 ARTFSFDEVKDQIRRQIAMDQLGDKATVKTLWKEADVSWFYGEKSTK    297
                     :||||::|||.||||||||:|||||||||||||||.||||||||.||
RBAM_000830__    250 SRTFSYNEVKSQIRRQIAMEQLGDKATVKTLWKEAGVSWFYGEKRTK    296


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