Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_00126 and RBAM_000830

See Amino acid alignment / Visit BSNT_00126 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence dna-align/BSNT_00126___yacD.1.9828.seq
#    -bsequence dna-align/RBAM_000830___yacD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00126___yacD-RBAM_000830___yacD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00126___yacD-RBAM_000830___yacD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00126___yacD
# 2: RBAM_000830___yacD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 904
# Identity:     662/904 (73.2%)
# Similarity:   662/904 (73.2%)
# Gaps:          23/904 ( 2.5%)
# Score: 2318.0
# 
#
#=======================================

BSNT_00126___      1 TTGAAATCAAGAACAATCTGGACCATTATTTTAGGGGCGCTGTTGGTTTG     50
                     ||||||||.||||||.|.|.|||.||||||.|||.|||||||||.||.||
RBAM_000830__      1 TTGAAATCGAGAACACTTTTGACGATTATTGTAGCGGCGCTGTTAGTATG     50

BSNT_00126___     51 CTGTATTGCTGTTGCATATACGCTGACGAAATCCCAAACCG-GCGCATCG     99
                     |.||.|..|.||.||.||||.|.|.||.|||||||||.||| |.|    |
RBAM_000830__     51 CAGTGTGACAGTGGCGTATAAGTTAACAAAATCCCAAGCCGCGGG----G     96

BSNT_00126___    100 TCATCCGGTGAGTCTATTGCGACTATCGGAGGCAAGAGTGTGACAAGAGA    149
                     |||||.|..||.||.||.|||||.|||||.|..||...|.|.|||.|..|
RBAM_000830__     97 TCATCTGAAGAATCCATCGCGACAATCGGTGATAAACATATCACACGGCA    146

BSNT_00126___    150 AGAATGGCTGAAAGAAATGGAAGATCAGTATGGTAAGTCAACGCTTGAAG    199
                     |||.|||.|||||.|.||||||||.|||||.||.||.|||||.||.||||
RBAM_000830__    147 AGACTGGATGAAAAAGATGGAAGACCAGTACGGAAAATCAACTCTGGAAG    196

BSNT_00126___    200 ATATGATCAATGTCCGAGTTGTTGAGCAGCTGGCTAAAAAGAACAACCTT    249
                     |.|||||.||||..|.|||.||.||..||||.||..|||||||.||.||.
RBAM_000830__    197 ACATGATTAATGCACAAGTAGTGGAAGAGCTTGCGGAAAAGAATAAACTC    246

BSNT_00126___    250 AAAATATCCAAAAGCGAAGTTGATCGTGAGTTTTTGCTGATTAAAGCGGT    299
                     |.|.|.||.||.||||||.|.||||||||||||.|..|.||.||||||||
RBAM_000830__    247 ACAGTTTCAAACAGCGAATTGGATCGTGAGTTTCTTTTAATCAAAGCGGT    296

BSNT_00126___    300 CAATAATTCCTTTTACGAAGATGAACATACGACGGAGAAAGAGTGGAAAG    349
                     ..|||||||.|||||.|||||....||||..||.||.|||||.||||.||
RBAM_000830__    297 AGATAATTCATTTTATGAAGACAGCCATATTACCGAAAAAGAATGGAGAG    346

BSNT_00126___    350 ACCAAATTCGTTATAATATCCTCCTTGAGGAATTGTTAACAAGGGATATC    399
                     ||||.||.||.||.||.||.||.|||||.|||.||.|.||.|.|||.|||
RBAM_000830__    347 ACCAGATCCGCTACAACATTCTTCTTGAAGAACTGCTGACGAAGGACATC    396

BSNT_00126___    400 GATATCTCAAACAAAGAATTGGAATCATTCTATAATAAAAATAAGGAACT    449
                     |||||.||..|.||.|||.||.|||||||.||||||||||||||.|||.|
RBAM_000830__    397 GATATATCGGATAAGGAAATGCAATCATTTTATAATAAAAATAAAGAATT    446

BSNT_00126___    450 ATATCAGTTTGATGATTCGTATCGAATTCGGCACATTGTTGTAAAGGATG    499
                     .||.||.||.||||||||.||..||||.|||||||||||.||.||..|..
RBAM_000830__    447 GTACCATTTCGATGATTCATACAGAATCCGGCACATTGTCGTCAAAAACA    496

BSNT_00126___    500 AAGAAGAAGCGAGAGAAG-----TCCTGAAAGAACTGAAAGGCGGATCAA    544
                     ||||.||.||| ||.|.|     |.||    ||..||||||||||.||.|
RBAM_000830__    497 AAGATGAGGCG-GACAGGGTGCTTGCT----GATTTGAAAGGCGGTTCCA    541

BSNT_00126___    545 GCTTTGAAGCTGTCGCTGCCGAAAGATCCACTGACAGATATACATCACCA    594
                     ||||||||||.|||||.||.||..|.|||||.||||||||.||.||||..
RBAM_000830__    542 GCTTTGAAGCCGTCGCCGCTGAGCGTTCCACGGACAGATACACGTCACAG    591

BSNT_00126___    595 TACGGCGGAGATTTAGGTTTTGTCACAGAGGCATCAGACAACAT-TCCAT    643
                     ||.||||||||..|.||.|||||.||||| ..||||| .||.|| |||..
RBAM_000830__    592 TATGGCGGAGACCTCGGCTTTGTGACAGA-AAATCAG-GAAAATATCCCG    639

BSNT_00126___    644 CA-GCATACATTGAAGAGGCGAAAACACTCAAAGAGGATGAATGGTCTCA    692
                     || |||||.||...|||.||.||||..||.|||||.|||||||||||...
RBAM_000830__    640 CAGGCATATATCACAGAAGCTAAAAAGCTTAAAGAAGATGAATGGTCCGT    689

BSNT_00126___    693 GGAACCAATAAAGG--TCAACAACGGATATGCCATTATCCAGCTGAAAGA    740
                     .|||||.||.||.|  ||..||  |||||.|||.|.||.|||||||||||
RBAM_000830__    690 TGAACCGATTAAAGTTTCTTCA--GGATACGCCGTCATTCAGCTGAAAGA    737

BSNT_00126___    741 AAAACTAAAGGCAAGAACGTTCTCATTTGATGAAGTAAAGGACCAGATCA    790
                     |||.||.||..|.|||||.|||||||...|||||||.|||..|||.||||
RBAM_000830__    738 AAAGCTTAAATCGAGAACTTTCTCATACAATGAAGTGAAGAGCCAAATCA    787

BSNT_00126___    791 GACGGCAAATCGCAATGGATCAGCTAGGCGATAAAGCGACAGTTAAGACA    840
                     ||||.||.|||||.|||||.||..||||.||.||.||||||||.||.||.
RBAM_000830__    788 GACGCCAGATCGCGATGGAACAATTAGGTGACAAGGCGACAGTCAAAACG    837

BSNT_00126___    841 CTTTGGAAAGAAGCCGATGTATCTTGGTTTTATGGGGAAAAAAGTACTAA    890
                     ||.||||||||.||.|..||.||||||||.||.|||||||||||.|||||
RBAM_000830__    838 CTGTGGAAAGAGGCGGGGGTCTCTTGGTTCTACGGGGAAAAAAGAACTAA    887

BSNT_00126___    891 GTGA    894
                     .|||
RBAM_000830__    888 ATGA    891


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00126 and RBAM_000830

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
