Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00081 and RBAM_000540

See DNA alignment / Visit BSNT_00081 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:51
# Commandline: needle
#    -asequence pep-align/BSNT_00081.1.9828.seq
#    -bsequence pep-align/RBAM_000540___sspF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00081-RBAM_000540___sspF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00081-RBAM_000540___sspF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00081
# 2: RBAM_000540___sspF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 62
# Identity:      52/62 (83.9%)
# Similarity:    52/62 (83.9%)
# Gaps:           8/62 (12.9%)
# Score: 257.0
# 
#
#=======================================

BSNT_00081         1 -------MSDEFKYELAKDLGFYDTVKNGGWGEIRARDAGNMVKRAIEIA     43
                            |||||||||||||||||||||.|||.|||||||||||||||||
RBAM_000540__      1 MGRRRGVMSDEFKYELAKDLGFYDTVKNEGWGGIRARDAGNMVKRAIEIA     50

BSNT_00081        44 EQQM-AQNQNNR     54
                     |||| |||||||
RBAM_000540__     51 EQQMAAQNQNNR     62


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