Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01536 and BPUM_3623

See DNA alignment / Visit BSNT_01536 in genome browser / Return to Orthologue table

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:04
# Commandline: needle
#    -asequence pep-align/BSNT_01536___yhcG.1.24716.seq
#    -bsequence pep-align/BPUM_3623.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01536___yhcG-BPUM_3623.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01536___yhcG-BPUM_3623.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01536___yhcG
# 2: BPUM_3623
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 304
# Identity:      68/304 (22.4%)
# Similarity:   122/304 (40.1%)
# Gaps:          79/304 (26.0%)
# Score: 256.0
# 
#
#=======================================

BSNT_01536___      1 MEIKLEHVSKKYGRHTAVNDVSITLSSGRIYGLIGPNGSGKSTTLKMMAG     50
                      .|::|.|:|.......:..:|.:|.||.|.||:||||:||:|.::.:.|
BPUM_3623          1 -MIEVEKVTKNIKSTEILKGISFSLRSGEILGLLGPNGAGKTTLMRTILG     49

BSNT_01536___     51 LLFPTSGFVKVDEEQVTRE---MVRQTAYLTELDMFYPHFTVKDMVNFYQ     97
                     |...:.|.:|.....:.:.   .:|:...|.|...|||..:..:.:::| 
BPUM_3623         50 LTSISKGDIKFKGNSIMKNNNFFLREVGALIETPKFYPDLSGYENLSYY-     98

BSNT_01536___     98 SQFPDFQTEQAYKLLNEMQLNPEK--KIKKLSKGNRGRLKIVLALARRAD    145
                      ...:.:....::::|.:.|...:  |:||.|.|.:.||.|..|:..:..
BPUM_3623         99 -NILNNRKADVHEIMNSLGLGDYRYLKVKKYSLGMKQRLGIAQAIMHKPQ    147

BSNT_01536___    146 VIVLDEPFSGLDPMVRDSIVNSLVSYI-DFEQQ--IVVIATHEIDEIETL    192
                     |::||||.:.|||    |.:..|..|| .|.:.  .|:|::|.|.|||::
BPUM_3623        148 VLILDEPMNALDP----SGIKFLKKYIKKFVENKGSVIISSHLISEIESI    193

BSNT_01536___    193 LDEVIILANGEKVAQREVEDIREQEGMSVLQWFKSKMEVC----------    232
                     .|:|:|:..|:......::....|.|:..:|..|..:...          
BPUM_3623        194 CDKVLIIDKGDVKKSIIIDGDFSQSGIFSIQVGKLDLNEAYNLLKEFTNK    243

BSNT_01536___    232 --------------------------------------------------    232
                                                                       
BPUM_3623        244 AIINKRRSTLELSCSKDRIPKLIYTLLRKDIPVYEVRKLRTPLEEVYFNS    293

BSNT_01536___    232 ----    232
                         
BPUM_3623        294 IVGS    297


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