Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01536 and BPUM_3623
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_01536___yhcG.1.24716.seq
# -bsequence dna-align/BPUM_3623.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01536___yhcG-BPUM_3623.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01536___yhcG-BPUM_3623.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01536___yhcG
# 2: BPUM_3623
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1013
# Identity: 439/1013 (43.3%)
# Similarity: 439/1013 (43.3%)
# Gaps: 433/1013 (42.7%)
# Score: 732.5
#
#
#=======================================
BSNT_01536___ 1 ATGGAAATCAAGCTAGAACATGTATCAAAAAAATACGGCCGCCAT---AC 47
||| ||..||.|||||.|.||..||||||| ||| |
BPUM_3623 1 ATG---ATTGAGGTAGAAAAAGTTACAAAAAA----------CATTAAA- 36
BSNT_01536___ 48 GGCCGTCAA-TGATGTGTCAATCAC-------CCTATC------------ 77
|||| ||| ||| || |.||||
BPUM_3623 37 -----TCAACTGA------AAT-ACTAAAAGGCATATCTTTTAGTTTAAG 74
BSNT_01536___ 78 ATCCGGACGGAT-TTATGGCCTGATCGGACCGAACGGCAGC-GGCAAGTC 125
|...|||..||| ||| ||..|..|.||.||.||||| ||| ||.||
BPUM_3623 75 AAGTGGAGAGATATTA-GGTTTACTAGGTCCAAACGG-AGCTGGGAA--- 119
BSNT_01536___ 126 AACGACCCTGAAAATGATGGCT------GGCCTTCTGTTTCCGACTTC-- 167
|||.||..|| ||||.|.|| |||||| ||.||
BPUM_3623 120 AACCACTTTG---ATGAGGACTATTTTGGGCCTT---------ACATCAA 157
BSNT_01536___ 168 -------AGG---------ATTT----GTGAAAGT-TGATGAAGAGCA-- 194
||| |||| ||.|.||| |.|||||||..|
BPUM_3623 158 TAAGTAAAGGAGACATAAAATTTAAAGGTAATAGTATTATGAAGAATAAT 207
BSNT_01536___ 195 -------GGTTACGAGAGAAAT-GGTGCGTCAA-----ACGGC------T 225
..||| ||||||.| |||||.|.|| ||..| |
BPUM_3623 208 AATTTTTTTTTA--AGAGAAGTAGGTGCTTTAATTGAGACCCCTAAATTT 255
BSNT_01536___ 226 TAT-CTTACTGAGCTTGATATG---TTTTATCCGCATTTCA--CTGTTAA 269
||| ||.|.|.|.||.|||||| ..|||| |..|||.|| .|.||||
BPUM_3623 256 TATCCTGATTTATCTGGATATGAAAACTTAT-CTTATTACAATATATTAA 304
BSNT_01536___ 270 A----------------------GATATGGTGAATT-------------- 283
| ||.||..||||.|
BPUM_3623 305 ATAATAGAAAAGCTGATGTACACGAAATAATGAACTCTCTTGGATTAGGA 354
BSNT_01536___ 284 -TTTATCAGTCGCAGTTTCCTGATTTTCAAA------------------C 314
.|||| ||.|.|||.|...|.||| .
BPUM_3623 355 GATTAT-------AGATACCTTAAAGTAAAAAAATACTCTTTAGGTATGA 397
BSNT_01536___ 315 AGAACAGGCTT----------------------ATAAGC----------- 331
||.|.|||||| ||||||
BPUM_3623 398 AGCAAAGGCTTGGAATAGCCCAAGCAATTATGCATAAGCCGCAAGTTTTA 447
BSNT_01536___ 332 -TATTG--------AATGAGATGCAGCTGAATCC----GGAAAAAAAGAT 368
|.||| ||||| |||| |||..|||| ||||.|||| .|
BPUM_3623 448 ATTTTGGATGAACCAATGA-ATGC-GCTCGATCCATCAGGAATAAAA-TT 494
BSNT_01536___ 369 C--AAAAAGCTATCAAAAGGAAATCGGGGCCGGCTGAAAAT---CGTTC- 412
| |||||..|| ||.||..|||| ..|.||||||| .|.||
BPUM_3623 495 CTTAAAAAAATA-CATAAAAAAAT------TTGTTGAAAATAAGGGATCA 537
BSNT_01536___ 413 -TTGCTTTAGCGAGACGGGCAGACGTCATC-------------------- 441
||..|.||.||| ||||||
BPUM_3623 538 GTTATTATATCGA-----------GTCATCTAATTTCTGAAATTGAATCC 576
BSNT_01536___ 442 ------------GTGCTT---------------GATG------------- 451
||.||| ||||
BPUM_3623 577 ATATGTGATAAAGTCCTTATAATTGATAAAGGAGATGTGAAAAAAAGTAT 626
BSNT_01536___ 452 AACC------------TTTT-----TCCGGGCTTGATCCGATGGTCA--- 481
||.| |||| ||||||.||..|.|.|| |||
BPUM_3623 627 AATCATAGATGGGGATTTTTCTCAATCCGGGATTTTTTCTAT--TCAAGT 674
BSNT_01536___ 482 --------GGGATTCCATCGTAAACAGCCTTGTGTCGTA-CATTGATTTT 522
.||||| |||| ||.|.|.|| .|||.|||
BPUM_3623 675 TGGAAAACTGGATT------TAAA------TGAGGCTTATAATTTATT-- 710
BSNT_01536___ 523 GAGCAGCAGATTGTCGTGATCGCGACACATGAAAT------TGATGAAAT 566
|..|||.|.|..|.||...|.||.|..|||| .|||.||.|
BPUM_3623 711 ----AAAAGAATTTACTAATAAAGCCATAATAAATAAGAGACGATCAACT 756
BSNT_01536___ 567 TGAGACTTT------------GTTAGA----CGAAGT--AATCATCC--T 596
|.|||..|| |.|||| |.|||| |.|.||.| |
BPUM_3623 757 TTAGAGCTTAGCTGCTCTAAGGATAGAATACCTAAGTTAATTTATACGTT 806
BSNT_01536___ 597 CGCCAATGGAGAAAAAGTTGCGCAG--CGTGAAGTA--GAAGATATTCGT 642
||..||||||..|..|.||| ..||||||| ||||.|| .
BPUM_3623 807 -----ATTAAGAAAAGATATCCCAGTTTATGAAGTAAGGAAGTTA----A 847
BSNT_01536___ 643 GAACA-----GGAAGGCATGTCTGTTTTGCAATGGTTTAAATCAAAAAT- 686
||||| ||||| |.||.|.||| ||||.|| |.|.|
BPUM_3623 848 GAACACCTTTGGAAG--AAGTTTATTT--CAATAGT--------ATAGTG 885
BSNT_01536___ 687 GGAAGTTTGCTAG 699
|||||||.|
BPUM_3623 886 GGAAGTTAG---- 894
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