Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05167 and BPUM_3612

See DNA alignment / Visit BSNT_05167 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:49
# Commandline: needle
#    -asequence pep-align/BSNT_05167___lacR.1.24716.seq
#    -bsequence pep-align/BPUM_3612___lacR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05167___lacR-BPUM_3612___lacR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05167___lacR-BPUM_3612___lacR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05167___lacR
# 2: BPUM_3612___lacR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 333
# Identity:     176/333 (52.9%)
# Similarity:   240/333 (72.1%)
# Gaps:           3/333 ( 0.9%)
# Score: 909.0
# 
#
#=======================================

BSNT_05167___      1 -MATIKDIAQEAGFSISTVSRVLNNDESLSVPDETREKIYEAAEKLNYRK     49
                      .|.|||||::||.||:|||||||.|.:|||.|:||||:|.|||.|:|:|
BPUM_3612___l      1 MAAKIKDIAEKAGLSIATVSRVLNQDPNLSVTDQTREKVYAAAEALSYQK     50

BSNT_05167___     50 KTVRPLVKHIAFLYWLTDKEELEDVYFKTMRLEVEKLAKAFNVDMTTYKI     99
                     ||.:..:|.||||||:|:||||||:|||::||.:|:|....::::|.|..
BPUM_3612___l     51 KTFKHSLKKIAFLYWMTEKEELEDIYFKSIRLGIEELTNTRSLNVTAYNP    100

BSNT_05167___    100 ADGIESIPEHTEGFIAVGTFSDEELAFLRNLTENGVFIDSTPDPDHFDSV    149
                     :||::||...|||.||:|.|...||..|..:|::.||||::|:.|.||||
BPUM_3612___l    101 SDGLQSIDPSTEGIIAIGRFKKSELDQLYAITQHIVFIDTSPNEDRFDSV    150

BSNT_05167___    150 RPDLAQMTRKTVNILTEKGHKSIGFIGGTYKNPNTNQDEMDIREQTFRSY    199
                     :|:|.::..|.::...||.|.||||:|||..:.|||....||||.|||.|
BPUM_3612___l    151 KPNLKRIVEKIIDSFIEKEHTSIGFVGGTDLDLNTNMHIPDIRETTFRDY    200

BSNT_05167___    200 MREKAMLDERYIFCHRGFSVENGYRLMSAAIDTLGDQLPTAFMIAADPIA    249
                     |:...:||||.::....|||:.||.||..|||.|||.||:||.:|:||:|
BPUM_3612___l    201 MKAHNVLDERLVYVGHHFSVDEGYALMMKAIDELGDDLPSAFCVASDPLA    250

BSNT_05167___    250 VGCLQALNEKGIAIPNRVSIVSINNISFAKYVSPPLTTFHIDIHELCKNA    299
                     :||||||||:|..:|||||:.|||:|..::||||||||:||....||:.|
BPUM_3612___l    251 IGCLQALNERGFPLPNRVSVFSINDIHVSQYVSPPLTTYHIHTSLLCETA    300

BSNT_05167___    300 VQLLLEQVQDKRRTVKTLYVGAELIVRKSMNEG    332
                     :.||||::.|.|...||:.:.:|.:.|||..  
BPUM_3612___l    301 IDLLLERLVDGRTLPKTVLIASEPVFRKSTI--    331


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