Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05167 and BPUM_3612
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_05167___lacR.1.24716.seq
# -bsequence dna-align/BPUM_3612___lacR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05167___lacR-BPUM_3612___lacR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05167___lacR-BPUM_3612___lacR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05167___lacR
# 2: BPUM_3612___lacR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1110
# Identity: 636/1110 (57.3%)
# Similarity: 636/1110 (57.3%)
# Gaps: 225/1110 (20.3%)
# Score: 1505.0
#
#
#=======================================
BSNT_05167___ 1 ATG---GCGACAATTAAAGATATCGCGCAGGAAGCGGGATTTTCAATCTC 47
.|| ||.|.|||.||.||.||.||..|..||||.|||||.||.||..|
BPUM_3612___l 1 TTGGCAGCTAAAATAAAGGACATTGCTGAAAAAGCTGGATTATCCATTGC 50
BSNT_05167___ 48 AACCGTTTCCCGCGTTTTAAATAACGATGAAAGCCTTTCTGTTCCTGATG 97
|||.||.||.|||||..|.||..|.|||...|.|||.|||||..|.|||.
BPUM_3612___l 51 AACTGTATCTCGCGTACTGAACCAAGATCCTAACCTATCTGTCACGGATC 100
BSNT_05167___ 98 AGACACGGGAGAAAATCTATGAAGCGGCGGAAAAGCT-----CAATTACC 142
|.|||||.||||||.|.||.|..||.||.| ||||| |.||
BPUM_3612___l 101 AAACACGTGAGAAAGTATACGCCGCCGCTG--AAGCTTTGTCCTAT---- 144
BSNT_05167___ 143 GCAAA--AAAACAGTAAGGCCGCTGGTGAAACAT------------ATTG 178
|||| |||||| .|.|||||| ||.|
BPUM_3612___l 145 -CAAAAGAAAACA------------TTCAAACATTCATTAAAAAAAATCG 181
BSNT_05167___ 179 CGTTTTTATATTGGCTGACAGATAAAGAAGAATTAGAAGATGTCTATTTT 228
|.|||.|.||||||.||||.||.||.|||||..|.||||||.|.||||||
BPUM_3612___l 182 CCTTTCTCTATTGGATGACCGAAAAGGAAGAGCTTGAAGATATTTATTTT 231
BSNT_05167___ 229 AAAACGATGAGATTAGAAGTAGAGAAACTGGCGAA-------AGCATTCA 271
|||.|.||..|..|||...|.|||.||||..|||| || .||.|
BPUM_3612___l 232 AAATCCATTCGTCTAGGCATCGAGGAACTTACGAATACTCGGAG-TTTAA 280
BSNT_05167___ 272 ATGTCGATATGACCACTTATAAAATAGCGGATGG-----AATCGA--GAG 314
||||| |||.||||.||...|.|.||||| ||||.| ||.
BPUM_3612___l 281 ATGTC------ACCGCTTACAATCCATCTGATGGGCTTCAATCCATTGAT 324
BSNT_05167___ 315 CATTCCTGAACATACGGAAGGGTTTATTGCCGTCGGCACATTT------T 358
|.||| |||.|||||..|.||.|||.|||||..|||| |
BPUM_3612___l 325 CCTTC-------TACAGAAGGAATCATCGCCATCGGCCGATTTAAAAAGT 367
BSNT_05167___ 359 CAGATGAAGAGCTGGCTTTCCTCAGA--AAT--------CTCACTGAAAA 398
|||| |||| || ||| .||||..||.|
BPUM_3612___l 368 CAGA----------GCTT------GATCAATTATATGCGATCACCCAACA 401
BSNT_05167___ 399 CGGCGTGTTCATCGATTCAACTCCTGATCCCGATCATTTTGACTCGGTAA 448
...|||.||.||.|||.|..|.||..||...||||.||||||.||.||||
BPUM_3612___l 402 TATCGTTTTTATTGATACGTCACCAAATGAAGATCGTTTTGATTCAGTAA 451
BSNT_05167___ 449 GGCCCGATTTGGCACAAA--------TGACAAGGAAGACGGTAAACATC- 489
.||||.|..|| ||| |||.||| |.||||
BPUM_3612___l 452 AGCCCAACCTG----AAAAGAATTGTTGAAAAG----------ATCATCG 487
BSNT_05167___ 490 -----CTGACTGAGAAGGGGCATAAGAGCATC----GGTTTTATCGGCGG 530
.|.|.|||.||.|..||.| |||| ||.||..|.|||||
BPUM_3612___l 488 ATTCTTTTATTGAAAAAGAACACA----CATCCATTGGATTCGTTGGCGG 533
BSNT_05167___ 531 CACATACAAAAATCCGAATACCAATCAGGATG-AAAT---GGACATCCGT 576
||||.||..|.|.|.||||||.||| ||| |.|| .||.||.||.
BPUM_3612___l 534 CACAGACTTAGACCTGAATACGAAT----ATGCATATTCCTGATATTCGC 579
BSNT_05167___ 577 GAACAAACCTTC--AGATCCTATATGAGGG---AAAAAGCCATGCTGGAC 621
|||..||||||| |||| |||||||.|| |.||.| |.||.||.
BPUM_3612___l 580 GAAACAACCTTCCGAGAT--TATATGAAGGCTCACAATG---TTCTTGAT 624
BSNT_05167___ 622 GAGCG------CTATATTTTCTGTCATCGCGGA-TTCTCTGTAGAAAACG 664
||||| ||| |.||.||||.| | |||||.||.||..|.|
BPUM_3612___l 625 GAGCGATTGGTCTA---TGTCGGTCACC----ATTTCTCAGTGGATGAAG 667
BSNT_05167___ 665 GCTACCGC-CTGATGTCAGCA--GCGATCGACACAT----TAGGCGATCA 707
|.|| .|| |||||| |..| |||||.| || |.||||||.|
BPUM_3612___l 668 GTTA-TGCGCTGATG--ATGAAGGCGATTG----ATGAGCTTGGCGATGA 710
BSNT_05167___ 708 GCTT-CCGACTGC-TTTTATGATTGC-AGCGGACCCGATTGCAGTGGGCT 754
||| ||..|.|| ||.|.|| |.|| || .|||||..||||..|.||||
BPUM_3612___l 711 -CTTGCCATCCGCATTCTGTG-TCGCTAG-TGACCCTCTTGCCATCGGCT 757
BSNT_05167___ 755 GTCTGCAAGCCCTGAACGAAAAAGGAATTGCCATACCAAACAGGGTAAGC 804
||.|.|||||..|.||||||...|||.||.|..|.||.|||.|.||.|||
BPUM_3612___l 758 GTTTACAAGCATTAAACGAACGGGGATTTCCTCTTCCGAACCGCGTGAGC 807
BSNT_05167___ 805 ATTGTGAGTATCAACAACA-TCA-GCTTCGCGAAGTATGTCTCGCCTCCT 852
.|..|.|||||||||.|.| ||| |..||.| |.|||||.||.||.||.
BPUM_3612___l 808 GTCTTTAGTATCAACGATATTCATGTGTCTC--AATATGTGTCACCACCG 855
BSNT_05167___ 853 CTGACGACGTTTCATATTGATATACATGAAT----TATGTAAAAATGCTG 898
||.||.||||.|||| ||..|||.|..| |.|||.|||..||..
BPUM_3612___l 856 CTCACCACGTATCAT----ATCCACACGTCTTTGCTTTGTGAAACAGCAA 901
BSNT_05167___ 899 TTCAATTACTGCTTGAACAAG---TGCAGGACAAGAGAAGAACGGTA--- 942
|..|.||||||.|.|| ||| ||.|| |..|.|||||..||
BPUM_3612___l 902 TCGATTTACTGTTAGA--AAGACTTGTAG----ACGGCAGAACATTACCG 945
BSNT_05167___ 943 AAAACATTATA-TG-TGGGCGCAGAATTAATCGTCAGGAAGAGTATGA-A 989
||||| |.|| || |.|.|.|||||..|.||.|..|.||.||||.|| |
BPUM_3612___l 946 AAAAC--TGTACTGATTGCCTCAGAACCAGTCTTTCGAAAAAGTACGATA 993
BSNT_05167___ 990 TGAAGGATGA 999
|.|
BPUM_3612___l 994 TAA------- 996
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