Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_02224 and BPUM_3572

See DNA alignment / Visit BSNT_02224 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence pep-align/BSNT_02224.1.24716.seq
#    -bsequence pep-align/BPUM_3572.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02224-BPUM_3572.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02224-BPUM_3572.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02224
# 2: BPUM_3572
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 565
# Identity:     220/565 (38.9%)
# Similarity:   321/565 (56.8%)
# Gaps:          51/565 ( 9.0%)
# Score: 1009.5
# 
#
#=======================================

BSNT_02224         1 MQAFDELLKVDELSFSYEEDEKPVFQDISFELQKGECVLLLGPSGCGKSS     50
                        .:..|..:.|:..:.|..:||...:|..:||||.||:|||||.|||:
BPUM_3572          1 ---MNSFLACNNLTVRFYEQPQPVLHQVSLSIQKGEKVLILGPSGSGKST     47

BSNT_02224        51 LALCLNGLYPEACDGIQSGHVFLFQKPVTDAETSQTIAQHAGVVFQDPDQ    100
                     |...|.|:.||..:....|.|.|              .:|.||:|||||.
BPUM_3572         48 LISVLAGIIPEHLEADMQGEVIL--------------QRHTGVMFQDPDS     83

BSNT_02224       101 QFCMLTVEDEIAFGLENLQIPKEEMTEKINTVLEKLRITHLKEKTISTLS    150
                     ||||..|.:||||.|||..:|::||.:.|..:::|:::.......|.|||
BPUM_3572         84 QFCMHRVNEEIAFSLENRSVPRDEMDDIIQQLMQKVQLEVDPNTDIHTLS    133

BSNT_02224       151 GGQKQKVALACILAMEPELIILDEPTSLLDPFSAREFVHLMKDLQREKGF    200
                     ||.||::||||:||:||:::..||||:.|||....|...|::.|..::..
BPUM_3572        134 GGMKQRLALACLLALEPDVLFFDEPTAQLDPAGRMEIFRLLQQLAADQRQ    183

BSNT_02224       201 SLLVIEHQLDEWAPWIERTIVLDKSGKKALDGLTKNLFQHEAETLKKLGI    250
                     :::.:||.||....|::|.|:||..|....||..|::.....:.:|:.||
BPUM_3572        184 TMIFVEHVLDGVIEWMDRVILLDDQGSILADGSPKDVLTTYEKEMKEAGI    233

BSNT_02224       251 TIPKVCHLQEKLSMPFTLSKKMLFKEPI-PPGH-------AKKKE-----    287
                     ..||:  ..||.|        .:.::|. |..|       |:|::     
BPUM_3572        234 WRPKL--FPEKWS--------TILQDPFHPMSHTFMQTFEARKEQHKQVP    273

BSNT_02224       288 APSGESVLEVSSLSFARGQQTIFKDISFSLRGGSLTALVGPNGTGKSTLL    337
                     |...|:::....|..:.|::.|..|:...::.|...|::|.||:||||.|
BPUM_3572        274 ATERETIMRSEDLQLSYGKKRIMSDLQLDIKTGDWVAIIGENGSGKSTCL    323

BSNT_02224       338 SVLARLMKPQSGKILLYDQPLQKYKEKELRKRMGFVFQNPEHQFVTDTVY    387
                     ..|.||...:.|.|.|.|..|:|:.::||.::.||||||||.||:.|||:
BPUM_3572        324 KHLVRLESTKKGHIFLKDTLLKKWSDRELYEKAGFVFQNPELQFIQDTVF    373

BSNT_02224       388 DELLFGQK-----ANAETEKKAQHLLQRFGLAHLADHHPFAISQGQKRRL    432
                     ||:.||.:     .|...||..| ||:.|||...|..|||.:|.||||||
BPUM_3572        374 DEIAFGGRQRNWPENVVQEKTIQ-LLKEFGLEKHAKAHPFTLSLGQKRRL    422

BSNT_02224       433 SVATMLMHDVKVLLLDEPTFGQDARTAAECMEMIQRIKAEGTAVLMITHD    482
                     ||||||:.|..||||||||||||.|||.|.:..::..:.:||.:||:|||
BPUM_3572        423 SVATMLLFDQDVLLLDEPTFGQDERTAKELIRRLKERQRQGTTILMVTHD    472

BSNT_02224       483 MELVSSYADSVLVLHDTGLAFDGSPAQLFSQETGLVQKAKLTLPLLYKWM    532
                     |:||...|:.||:.|.....::|:|..|||.:. ||...:|..||.|::|
BPUM_3572        473 MDLVDECANQVLLFHQGKHVYEGTPYDLFSNQE-LVNAYQLRAPLHYQYM    521

BSNT_02224       533 AYQEEVRDEAAVTSH    547
                     ..:::|...|.    
BPUM_3572        522 TERKDVLTIAK----    532


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.