Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02224 and BPUM_3572
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_02224.1.24716.seq
# -bsequence dna-align/BPUM_3572.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02224-BPUM_3572.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02224-BPUM_3572.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02224
# 2: BPUM_3572
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1977
# Identity: 973/1977 (49.2%)
# Similarity: 973/1977 (49.2%)
# Gaps: 711/1977 (36.0%)
# Score: 2007.5
#
#
#=======================================
BSNT_02224 1 ATGCAAGCCTTTGATGAGCTTCTTAAGGTTGACG---------AGCTCAG 41
|||.| ||.|| |||| || |.||||
BPUM_3572 1 ATGAA-----TTCAT----TTCT---------CGCGTGCAATAATCTCA- 31
BSNT_02224 42 CT-TC---TCTTATGAAGA-----AGACGAGAAACCGGTTTT---TCAAG 79
|| || |.|||||||.| || ||.||||| |||||
BPUM_3572 32 CTGTCCGTTTTTATGAACAGCCTCAG--------CCCGTTTTGCATCAAG 73
BSNT_02224 80 ACATTTCGTTTGAGC-TTCAAAAAGGAG--AATGTGTTTTATTATTAGGA 126
|.|| |.||..| |||||||||||| ||.||| .||||| ||||||
BPUM_3572 74 ---TCTC-TCTGTCCATTCAAAAAGGAGAAAAGGTG-CTTATT-TTAGGA 117
BSNT_02224 127 CCGAGCGGGTGCGGTAAAAGCTCGCTCGCCCTTTGTTTAAACGGTCTATA 176
||.|||||..|||||||| |.||||.|| |
BPUM_3572 118 CCAAGCGGAAGCGGTAAA-------------------TCAACGCTC---A 145
BSNT_02224 177 TC-CGG---AGGCTTGCGACGGCATTCAGTCC-GGACATGTATTTCTATT 221
|| ||| .|||| |||| |||.||| |.||| |
BPUM_3572 146 TCTCGGTTCTGGCT------GGCA-TCATTCCAGAACA-----------T 177
BSNT_02224 222 TCAAAAGCCGGTCACAGATGCTGAGACCTCCCAAACG--ATTGCTCAG-C 268
|.|.||||.| |.||||.|.| |.||..| |||||..|| |
BPUM_3572 178 TTAGAAGCGG-----ATATGCAGGG-----CGAAGTGATATTGCAAAGAC 217
BSNT_02224 269 ATGCCGGGGTCGTTTTTCAGGATCCTGATCAGCAGTTCTGCATGCTGA-C 317
||.|.||.|||.|.||||||||.||||||...|||||.||.|||| | |
BPUM_3572 218 ATACAGGCGTCATGTTTCAGGACCCTGATTCCCAGTTTTGTATGC--ATC 265
BSNT_02224 318 G-GTGGAGGACGAAATTGCATT---------------------------- 338
| ||..|.||.||||||||.||
BPUM_3572 266 GCGTCAATGAAGAAATTGCCTTTAGCTTAGAGAACCGCTCCGTCCCTCGC 315
BSNT_02224 339 --CGGGCTGGA--AAATC-------------TGC--AAATTCCAA----A 365
||.|.|||| |.||| ||| |||.||||| |
BPUM_3572 316 GACGAGATGGATGATATCATTCAACAGCTCATGCAAAAAGTCCAACTCGA 365
BSNT_02224 366 AGAAGA----AATGACAGAGAAAATCAACACCGTATTAGAAAAATTGCGC 411
||..|| ||| ||||| |
BPUM_3572 366 AGTCGATCCGAAT-ACAGA------------------------------C 384
BSNT_02224 412 ATT-ACCCATTTAAAAGAAAAAACGATATCTACCCTTTCAGGAGGACAAA 460
||| ||.||| ||||| ||.||....|
BPUM_3572 385 ATTCACACAT----------------TATCT---------GGCGGTATGA 409
BSNT_02224 461 AGCAAAAAGTGGCTCTCGCCTGTATTTTGGCGATGGAGCC---TGAGCTT 507
||||...|.||||.||.||.|||.|.||.||..|.||||| ||.|| |
BPUM_3572 410 AGCAGCGATTGGCGCTTGCTTGTTTATTAGCTTTAGAGCCAGATGTGC-T 458
BSNT_02224 508 ATTATTTTAGATGAGCCGACCTCTCTTTTAGACCCTT--TCTCAGCGCG- 554
.||.||| |||||.||||||.|.| || ||| || ||||..|
BPUM_3572 459 GTTCTTT--GATGAACCGACCGCAC----AG---CTTGATC-CAGCAGGC 498
BSNT_02224 555 -----GGAGTTCGTTCATCTGATGAAGGATCTTCAGCGGGAAAAAGGTTT 599
||||.||.|||..|| |||.|||| ||.||.
BPUM_3572 499 AGAATGGAGATCTTTCGGCT---------TCTACAGC-------AGCTTG 532
BSNT_02224 600 CAGC--CTCCTCGTCA--------------TTGAGCACCAGCTTGAT--- 630
|||| .||..||.|| |.|||||...|||.|||
BPUM_3572 533 CAGCTGATCAGCGACAAACCATGATTTTTGTAGAGCATGTGCTAGATGGT 582
BSNT_02224 631 ------GAATGGGCGCCTTGGATTGAGAGAACGATCGTACTCGACAAATC 674
||| |||||.||..|...|||..||.|.||| .|||
BPUM_3572 583 GTCATCGAA---------TGGATGGACCGGGTGATTTTATTAGAC-GATC 622
BSNT_02224 675 -AGGCAAAAAGGC------GCTG--------------GATGGCTTGACGA 703
||||| || |||| ||||..|||||||
BPUM_3572 623 AAGGCA-----GCATCTTAGCTGATGGATCTCCAAAAGATGTATTGACGA 667
BSNT_02224 704 ------AAAATCTATTTCAG-CATGAA---------------GCGG-AGA 730
|||| || .||||| |||| .||
BPUM_3572 668 CATATGAAAA--------AGAAATGAAAGAGGCAGGGATATGGCGGCCGA 709
BSNT_02224 731 CACTA------AAGAAATTGGGCATCACCATTCCAAAGGTC--TGTCATC 772
.|.|| .||||||.|..||..|.|.||| |||.|| |.|||||
BPUM_3572 710 AATTATTTCCCGAGAAATGGTCCACAATCCTTC--AAGATCCATTTCATC 757
BSNT_02224 773 TGCAGGAAAAGCTGAGT-ATGCCGTTTA-------CTTTATCAAAAAAGA 814
|| .||||| || .|||||| ||| |.||..||||
BPUM_3572 758 --CA-------ATGAGTCAT-ACGTTTATGCAAACCTT--TGAAGCAAGA 795
BSNT_02224 815 TGCTGTTCAAAGAGCCTATTCCTCCCGGGCATGCCAAAAAGAAGGAAGCT 864
||||||| .|||| |||.|||
BPUM_3572 796 --------AAAGAGC------------AGCAT-----AAACAAG------ 814
BSNT_02224 865 CCTTCTG-GGGAGAGTGTGCTTGAAGTCAGCAGCCTTTCGTTCGCGAGAG 913
|| .||.||.||.||..||...||.|| |.||||
BPUM_3572 815 -----TGCCGGCGACTGAGCGGGAGACCATCA----TGCGTT-------- 847
BSNT_02224 914 GACAGCAGACGATTTTC------------------AAAGACAT------- 938
||||.|||.||| ||||| ||
BPUM_3572 848 -----CAGAAGATCTTCAATTAAGCTACGGGAAAAAAAGA-ATTATGAGT 891
BSNT_02224 939 ------CAGCTTTTCGTTGCGCGGAGGCTCTTTAA-------------CG 969
|||||| |.|.||.|| .|
BPUM_3572 892 GATCTCCAGCTT--------------GATATTAAAACAGGGGATTGGGTG 927
BSNT_02224 970 GCGCTTGTTGGTCCGAATGGCACT-GGAAAATCGACGC-----TCTT-AT 1012
|||.|..||||....|||||.|.| |||||| || |||| |.
BPUM_3572 928 GCGATCATTGGGGAAAATGGAAGTGGGAAAA-----GCACATGTCTTAAA 972
BSNT_02224 1013 CAGTTCTGGCCCGTCTCATGAAACCGCAAAGCGGC-----------AAAA 1051
|| |.|||..|||.|...|..|.||.|||..||| ||||
BPUM_3572 973 CA--TTTGGTTCGTTTAGAGTCAACGAAAAAAGGCCACATTTTCTTAAAA 1020
BSNT_02224 1052 -------TCCTTCTCTA-----TGACCAG-CCGCTGCAGAAATATAAAGA 1088
|||| || ||..||| .|| ||||.||| |.||
BPUM_3572 1021 GACACACTCCT----TAAAAAGTGGTCAGATCG----AGAACTAT-ATGA 1061
BSNT_02224 1089 AAAAGAATTGCGTAAACGGATGGGATTTGTTTTTCAAAACCCTGAGCATC 1138
|||||.| ||.|||||.||||||||.||.||||.||
BPUM_3572 1062 AAAAGCA---------------GGCTTTGTGTTTCAAAATCCGGAGCTTC 1096
BSNT_02224 1139 AATTCGTCAC-CGATACGGTGTATGACGA----GCTTCTGTTCGGCCAGA 1183
|||||.| || .|||||.||||..||.|| ||.|.||.| .||
BPUM_3572 1097 AATTCAT-ACAAGATACAGTGTTCGATGAAATTGCATTTGGT-----GGA 1140
BSNT_02224 1184 AAGCAAATGCTGA-----------AAC--TG----AGAAAAAAGCGCAA- 1215
|.||| ||.|| ||| || |||||||| |.|
BPUM_3572 1141 AGGCA---GCGGAATTGGCCAGAGAACGTTGTACAAGAAAAAA---CCAT 1184
BSNT_02224 1216 -CACCTGCTG-CAGCGTTTTGGTCTTG---CGCATTTGGCTGATCATCAT 1260
||.||..|| .||.| ||.|||.|.| .|||| ||..|...||||
BPUM_3572 1185 TCAGCTATTGAAAGAG-TTCGGTTTAGAAAAGCAT---GCAAAAGCTCAT 1230
BSNT_02224 1261 CCGTTTGCGATCAGCCAAGGGCAAAAACGGCGACTGAGCGTAGCTACTAT 1310
||.||..|..|.|||..|||.||||||.|..||.||||.||.|||||.||
BPUM_3572 1231 CCTTTCACTTTAAGCTTAGGTCAAAAAAGAAGATTGAGTGTGGCTACAAT 1280
BSNT_02224 1311 GCTCATGCATGACGTAA--AGGTTTTATTATTAGACGAACCAACCTTTGG 1358
||||.|...||| |.| |.||..||||.|||||||||||.||.||.||
BPUM_3572 1281 GCTCCTTTTTGA--TCAGGATGTCCTATTGTTAGACGAACCGACTTTCGG 1328
BSNT_02224 1359 CCAGGATGCCCGCACGGCGGCTGAATGCAT--GG-----AAATGA--TTC 1399
.|||||||...|.||.|||...||||..|| || |||.|| .||
BPUM_3572 1329 ACAGGATGAAAGAACAGCGAAGGAATTAATCAGGCGCTTAAAAGAACGTC 1378
BSNT_02224 1400 AGCGTATCAAGGCAGAGGGAACCGCTGTCCTTATGATTACACACGATATG 1449
|.|| .|||||| |||.||.|..|.|||.|.|||||.||||||
BPUM_3572 1379 AACG--CCAAGGC-------ACCACTATTTTAATGGTCACACATGATATG 1419
BSNT_02224 1450 GAGCTAGTCTCTTCGTATGCTGA-CAGCGTGCTTGTGCTTC----ACGAT 1494
||.||.|||..|..||.|||..| || .||||||.|..||| |.||.
BPUM_3572 1420 GACCTTGTCGATGAGTGTGCCAATCA-AGTGCTTCTTTTTCATCAAGGAA 1468
BSNT_02224 1495 ACGGGCCTG-------------GCCTT-TGACGGATCTCCAGCTCAGTTG 1530
| ||.|| ||||| ||| || ||
BPUM_3572 1469 A---GCATGTGTATGAAGGTACGCCTTATGA------------TC---TG 1500
BSNT_02224 1531 TTTTC---TCAAGAAACTGGGCTTGTCCAAAAAGCAAAGCTCACC--CT- 1574
||||| |||.||| ||||| |||.|||.|.| ||
BPUM_3572 1501 TTTTCAAATCAGGAA------CTTGT--------CAATGCTTATCAGCTG 1536
BSNT_02224 1575 ----CCCCCTT-CTATATAAATGGATGGCATATCAAG--AGGAGGTGCGT 1617
||||.|| |..|||.|||..|||.|..| ||| ||||.|||| |
BPUM_3572 1537 AGAGCCCCGTTGCATTATCAATATATGACTGA--AAGAAAGGACGTGC-T 1583
BSNT_02224 1618 GATGAAGCAGCCGTTACATCTCATTAA 1644
||.|| ||.|| .|.|||
BPUM_3572 1584 GACGA--------TTGCA---AAGTAA 1599
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