Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02223 and BPUM_3571

See DNA alignment / Visit BSNT_02223 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence pep-align/BSNT_02223___ykoC.1.24716.seq
#    -bsequence pep-align/BPUM_3571___ykoC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02223___ykoC-BPUM_3571___ykoC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02223___ykoC-BPUM_3571___ykoC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02223___ykoC
# 2: BPUM_3571___ykoC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 266
# Identity:      92/266 (34.6%)
# Similarity:   146/266 (54.9%)
# Gaps:          34/266 (12.8%)
# Score: 391.0
# 
#
#=======================================

BSNT_02223___      1 MKQPLH----LINATVKAAA---VFCCVVMLSFIYNPYTPACFYIIIIAG     43
                      .|..|    .:|.|:|..|   ..||::.:|   :|.|  .|.|.:.| 
BPUM_3571___y      1 -MQSNHSFLSTVNPTIKLLAHLLAMCCLMAIS---DPKT--TFIIWLFA-     43

BSNT_02223___     44 VLLAAGIPLKKW---LLFT--IPFLILAFGCVWTAAVFGKVPTTPDNFLF     88
                       |..|:.|..|   .|||  :|:|:......|..|.|||    .|:.::
BPUM_3571___y     44 --LGIGLVLGGWNLKYLFTRLVPYLLFFILVFWMMAAFGK----GDHTVW     87

BSNT_02223___     89 QAGPISINSDNVSVGISLGFRILCFSALSMMFVFTTDPILFMLSLVQQCR    138
                     :.....:..:::..|:::..|:|.|....::|..|||...||:||:.||:
BPUM_3571___y     88 KWAWFHMTEESLRNGLTIALRMLGFVTFGLLFTSTTDLTAFMMSLIHQCK    137

BSNT_02223___    139 LSPKLAYGVIAGFRFLPLLKDEVQLIQQAHKIRGGAAESGIINKIGALKR    188
                     :|||.|||::|||||:||.:.|::.::.||||||...:    |...|..|
BPUM_3571___y    138 ISPKWAYGMLAGFRFIPLFQSELKQMKAAHKIRGYKQK----NSWKAFIR    183

BSNT_02223___    189 YTIPLLVSAIRKAERTALAMESKGFTGSRNRTYYRTLSVNRRDWVFFCLV    238
                     |.:||....:||:||.|:|||::||||.|:||||..:|.:..|:::..|:
BPUM_3571___y    184 YALPLFTQGVRKSERLAIAMEARGFTGERDRTYYHVISTSWIDYMYLLLI    233

BSNT_02223___    239 LLLFAGSFLVSLCFAS    254
                     ::    |.|..:.|. 
BPUM_3571___y    234 VI----SVLTCMSFF-    244


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